search for: lrlapack

...bustbase is this not a problem at compiling? The problem is that if I try to install the source with install.packages("robustbase"), I get: gcc -std=gnu99 -shared -o robustbase.so R-rng4ftn.o init.o lmrob.o mc.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o wgt_himed.o -L/usr/lib/R/lib -lRlapack -lblas -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lRlapack collect2: ld returned 1 exit status Despite the fact that I do have Rlapack: ~$ R CMD config LAPACK_LIBS -L/usr/lib/R/lib -lRlapack Am...

...lmer.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -g -O2 -c local_stubs.c -o local_stubs.o gcc -std=gnu99 -shared -o lme4.so init.o lmer.o local_stubs.o -L/usr/lib64/R/lib -lRlapack -lblas -lgfortran -lm -lgcc_s -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lRlapack collect2: ld devolvi? el estado de salida 1 make: *** [lme4.so] Error 1 ERROR: compilation failed for package ?lme4? * removing ?/usr/local/lib/R/site-library/lme4? The downloaded packages are in ?/tmp/...

...rst thing I did: tried to install using install.packages("robustbase"), which downloads the source and tries to compile. But the gcc step fails: gcc -std=gnu99 -shared -o robustbase.so R-rng4ftn.o init.o lmrob.o mc.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o wgt_himed.o -L/usr/lib/R/lib -lRlapack -lblas -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lRlapack collect2: ld returned 1 exit status Also, when you say "fill a bug with Ubuntu", is there an r-sig-ubuntu or the Launchpad for...

...someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on machine2 with: python setup.py install /usr/bin/ld: cannot find -lRlapack collect2: ld returned 1 exit status error: command 'gcc' failed with exit status 1 I think that the reason is that while on machine1 I get: R CMD config LAPACK_LIBS -llapack on machine2 I get R CMD config LAPACK_LIBS -L/usr/lib/R/lib -lRlapack Could someone tell me (or point me to a rele...

...-Message 1----- > Dear Martin, > I'm trying to install packages robustbase and mvoutlier on ubuntu 8.04 > but get the following problem: > gcc -std=gnu99 -shared -o robustbase.so R-rng4ftn.o init.o lmrob.o mc.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o wgt_himed.o -L/usr/lib/R/lib -lRlapack -lblas -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/R/lib -lR > /usr/bin/ld: cannot find -lRlapack > collect2: ld returned 1 exit status > > Nevertheless, I do have Rlapack: > ~$ R CMD config LAPACK_LIBS > -L/usr/lib...

...bustbase is this not a problem at compiling? The problem is that if I try to install the source with install.packages("robustbase"), I get: gcc -std=gnu99 -shared -o robustbase.so R-rng4ftn.o init.o lmrob.o mc.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o wgt_himed.o -L/usr/lib/R/lib -lRlapack -lblas -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lRlapack collect2: ld returned 1 exit status Despite the fact that I do have Rlapack: ~$ R CMD config LAPACK_LIBS -L/usr/lib/R/lib -lRlapack Am...

...alled Start R and use the following command, but got warnings! install.packages("rstan", dependencies = TRUE, repos = "http://cran.r-project.org/") ... g++ -m64 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lgfortran collect2: error: ld returned 1 exit status make: *** [RcppEigen.so] Error 1 ERROR: compilation failed for package 'RcppEigen' * removing '/usr/lib64/R/library/RcppEigen' ... ** packa...

...cc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mhroc_prop.so mhroc_prop.o mvndstpack.o -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRlapack -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRblas -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.0 -lgfortran -lgcc_s.10.4 -lSystemStubs -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.0 -lgfortran -lgcc_s.10.4 -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R Any ideas...

...o qnorm_probeset.o rlm_anova.o rlm.o rlm_PLM.o rlm_se.o rlm_threestep.o rma_background2.o rma_common.o rma_PLM.o rmaPLM_pseudo.o SCAB.o scaling.o threestep.o threestep_common.o threestep_PLM.o threestep_summary.o threestep_summary_methods.o transfns.o weightedkerneldensity.o -L/usr/lib64/R/lib -lRlapack -lblas -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lblas collect2: ld returned 1 exit status make: *** [affyPLM.so] Error 1 ERROR: compilation failed for package 'affyPLM' ** Removing '/usr/lib64/R/library/affyPLM' ** Restoring previous '/usr/lib64/R/library/affyPLM'...

...32, the process ends with the following error message: > make --no-print-directory -C ../modules \ > OPTFLAGS='-O3 -Wall -pedantic -std=gnu99' FOPTFLAGS='-O3 -Wall' -f > Makefile.wi n gcc -shared -s -o lapack.dll lapack.def Lapack.o > dllversion.o -L../../../bin - lRlapack -lRblas -lR > c:\minGW\bin\..\lib\gcc\mingw32\3.4.5\..\..\..\..\mingw32\bin\ld.exe: > cannot fin > d -lRlapack > collect2: ld returned 1 exit status > make[5]: *** [lapack.dll] Error 1 > make[4]: *** [all] Error 2 > make[3]: *** [all] Error 1 > make[2]: *** [rmodules] Error...

...m III (600 MHz); OpenBSD 3.2 GENERIC#25 i386 Remote gcc version: gcc (GCC) 3.2.2 Remote g++ version: g++ (GCC) 3.2.2 Configure environment: CC=gcc CXX=g++ LDFLAGS=-Wl,-rpath,/usr/local/lib gcc -shared -Wl,-rpath,/usr/local/lib -o lapack.so Lapack.lo rgeev.lo rsyev.lo -L../../../bin -lRlapack -L/usr/lib/debug -L/usr/local/lib/gcc-lib/i386-unknown-openbsd3.2/3.2.2 -L/usr/local/lib/gcc-lib/i386-unknown-openbsd3.2/3.2.2/../../.. -lfrtbegin -lg2c -lm -lbz2 -lz -lreadline -lncurses -lm ld: -lRlapack: no match collect2: ld returned 1 exit status make[4]: *** [lapack.so] Error 1 make[4]: Leav...

...rom incompatible pointer type 1221.c: In function `Matrix_A_2': 1221.c:1289: warning: passing arg 3 of `dpotrf_' from incompatible pointer type 1221.c:1290: warning: passing arg 4 of `dpotrs_' from incompatible pointer type gcc -shared -L/usr/local/lib -o WXT.so 1221.o -L/usr/lib/R/bin -lRlapack -L/usr/local/lib -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.2 -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.2/../../.. -lfrtbegin -lg2c -lm -lgcc_s /usr/bin/ld: cannot find -lfrtbegin collect2: ld returned 1 exit status make: *** [WXT.so] Error 1 ERROR: compilation failed for package 'WXT' ** Rem...

...sion from string constant to ?char*? splmDIC.cpp:430: warning: deprecated conversion from string constant to ?char*? splmDIC.cpp:431: warning: deprecated conversion from string constant to ?char*? g++-4.3 -shared -L/usr/local/lib -o splmDIC.so splmDIC.o covmodel.o util.o -L/usr/local/lib/R/lib -lRlapack -L/usr/local/lib/R/lib -lRblas -L/usr/lib/gcc/i486-linux-gnu/3.4.6 -lg2c -lm -lgcc_s Thanks for your time. Kind regards- Andy -- Andrew Finley, PhD Natural Resources Building Michigan State University East Lansing, MI 48824-1222 Phone: 517-432-7219 Fax: 517-432-1143 web: http://blue.for.msu....

...-ID:/hli/Programfiles/R-3.2.2/library/Rcpp/include -ID:/hli/Programfil es/R-3.2.2/library/RInside/include -O2 -Wall -mtune=core2 -Wall -s rinside_sam ple0.cpp -LD:/hli/Programfiles/R-3.2.2/bin/i386 -lR -lm -LD:/hli/Programfiles /R-3.2.2/bin/i386 -lRblas -LD:/hli/Programfiles/R-3.2.2/bin/i386 -lRlapack "D:/h li/Programfiles/R-3.2.2/library/RInside/lib/i386/libRInside.a" -o rinside_sampl e0 rinside_sample0.cpp:1: error: bad value (core2) for -mtune= switch make: *** [rinside_sample0] Error 1 Dose anyone know how to fix this error? Thanks....

...ate f77 files. I find that libR.a appears to contain the symbols but there is no libR.so I'm compiling earth using: gcc -DSTANDALONE -DMAIN -Wall -pedantic -Wextra -O3 -std=gnu99 -I/home/badbear/Documents/code/localpackages/lib64/R/include -I../src/tests ../src/earth.c -L. -lblas -lRblas -lRlapack -o earthMain (I have placed libRblas.so and libRlapack.so in the local folder because I was having problems with linking to them in another location) Do I need to create a shared-object from libR.a? Do I need to link agains libR.a directly? Many thanks, Casper

...30~1.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c galgo_fitnesses.c -o galgo_fitnesses.o gcc -m32 -shared -s -static-libgcc -o galgo.dll tmp.def galgoDistance.o galgo_fitnesses.o -LC:/PROGRA~1/R/R-30~1.0/bin/i386 -lRlapack -LC:/PROGRA~1/R/R-30~1.0/bin/i386 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/R/R-30~1.0/bin/i386 -lR galgo_fitnesses.o:galgo_fitnesses.c:(.text+0xda1): undefined reference to `La_svd' collect2: ld returned 1 exit...

...G -I/usr/local/include -I"/share/apps/R-2.15.3/library/Matrix/include" -I"/share/apps/R-2.15.3/library/stats/include" -fpic -g -O2 -c local_stubs.c -o local_stubs.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o lme4.so init.o lmer.o local_stubs.o -L/share/apps/R-2.15.3/lib -lRlapack -L/share/apps/R-2.15.3/lib -lRblas -lgfortran -lm /usr/bin/ld: cannot find -lgfortran collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package 'lme4' * removing '/share/apps/R-2.15.3/library/lme4' The downloaded source packages a...

Hi, While I was trying to build R 2.5.0 src on Red Hat Enterprise Linux ES release 4 (Nahant Update 4) Kernel 2.6.9-42.ELsmp on an x86_64 The following errors occurred: gcc -std=gnu99 -shared -L/usr/local/lib64 -o lapack.so Lapack.o -L../../../lib -lRlapack -L../../../lib -lRblas -lg2c -lm -lgcc_s /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a(s_cat.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a: could not read sym...

...ide it, so I am at a loss as to why this happening. The specific error is brought below. Thank you, Avi F:/R/Rtools/gcc492_64/bin/windres -i dllversion.rc -o dllversion.o F:/R/Rtools/gcc492_64/bin/gcc -std=gnu99 -shared -s -o lapack.dll lapack.def Lapack.o dllversion.o -L../../../bin/x64 -lRlapack -lRblas -lR cp lapack.dll ../../../modules/x64/lapack.dll building package 'base' building package 'tools' making text.d from text.c C:/Rtools/gcc492_64/bin/gcc: not found make[4]: *** [text.d] Error 127 make[3]: *** [mksrc-win2] Error 1 make[2]: *** [all] Error 2 make[1]: *** [R] E...

...mon.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o SPQR.a CHOLMOD.a COLAMD.a AMD.a -L/usr/local/apps/R/R-2.8.1/lib64/R/lib -lRlapack -lRblas -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lpthread -lm -pgf90libs /usr/lib64/crt1.o(.text+0x21): In function `_start': ../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' CHMfactor.o(.text+0x28): In function `CHMfactor_to_sparse...