search for: longitudinaldata

...tation mismatches ... WARNING S4 class codoc mismatches from documentation object 'LongData-class': Slots for class 'LongData' Code: id other time traj varName Docs: id time traj varName --- 8< ---------------- But here is what I get : --- 8< ---------------- R CMD check longitudinalData * checking for working pdflatex ... OK * using log directory 'C:/Documents and Settings/Christophe/Mes documents/Recher che/Trajectoires/kmeal/longitudinalData.Rcheck' * using R version 2.9.0 beta (2009-04-04 r48290) * using session charset: ISO8859-1 * checking for file 'longitudinalD...

...lass': Slots for class 'LongData' Code: id other time traj varName Docs: id time traj varName --- 8< ---------------- But here is what I get on my computer: --- 8< ---------------- C:\Documents and Settings\Christophe\Mes documents\Recherche\Trajectoires\kmeal> R CMD check longitudinalData * checking for working pdflatex ... OK * using log directory 'C:/Documents and Settings/Christophe/Mes documents/Recher che/Trajectoires/kmeal/longitudinalData.Rcheck' * using R version 2.9.0 Patched (2009-06-07 r48733) * using session charset: ISO8859-1 * checking for file 'longitudin...

...quite often receive some email about a specific bug. The answer is always the same, I tell people to remove the package Matrix, and then kml works fine. I wonder what my code is not compatible with the Matrix package. Here is a (simplified) version of the kml code : --- 8< ------------ library(longitudinalData) setClass(Class="CLD", contains=c("LongData","ListPartition")) myCld <- new("CLD", idAll=as.character(c(100,102,103,109,115,123)), idFewNA=as.character(c(100,102,103,109,115,123)), time=c(1,2,4,8,15), varNames="P",...

...uot;] dn["traj"] --- 8< ----------------- Execution of the previous code ------------------- > library(kml) Le chargement a n?cessit? le package : clv Le chargement a n?cessit? le package : cluster Le chargement a n?cessit? le package : class Le chargement a n?cessit? le package : longitudinalData Le chargement a n?cessit? le package : rgl Le chargement a n?cessit? le package : misc3d > dn <- gald(1) ########### #### (1] #### ### (1) the "[" operator works just fine > dn["traj"] t0 t1 t2 t3 t4 t5 t6 t7 t8 t9 t10 i1 -3.11 4.32...

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

...idgetstcltk (0.0-31), helloJavaWorld (0.0-7), hergm (1.1-1), HiddenMarkov (1.3-1), hyperdirichlet (1.4-2), ibr (1.2.1), ic.infer (1.1-3), Imap (1.32), integrativeME (1.2), integrOmics (2.55), interval (0.9-9.6), ipw (1.0-4), kml (1.1.1), ks (1.6.11), latticeExtra (0.6-9), lda (1.2), lokern (1.0-9), longitudinalData (0.6.3), MAc (1.0.5), MAc (1.0.6), MAd (0.2), mboost (2.0-3), mc2d (0.1-7), mclust (3.4.3), MCMCglmm (2.03), mhsmm (0.3.2), mixAK (0.8), MKmisc (0.6.1), monomvn (1.8-1), MplusAutomation (0.2-2), MplusAutomation (0.2-3), multcomp (1.1-6), mvpart (1.3-1), ncvreg (2.0), neuralnet (1.3), nlstools (0.0-...

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...13), kza (1.03.1), languageR (1.0), lasso2 (1.2-11), latentnet (2.3-0), lattice (0.18-8), latticedl (1.1), latticeExtra (0.6-11), latticist (0.9-43), lda (1.2.1), ldDesign (1.2-0), lemma (1.3-1), lgtdl (1.1.1), limSolve (1.5.2), linprog (0.9-0), lme4 (0.999375-34), logging (0.4-42), logistf (1.10), longitudinalData (0.6.5), lordif (0.1-5), ltm (0.9-4), maanova (1.18.0), MAc (1.1), MAd (0.8), mapdata (2.1-3), maps (2.1-4), maptools (0.7-34), marelac (2.1), MASS (7.3-7), Matrix (0.999375-42), matrixStats (0.2.1), maxLik (0.7-2), mbmdr (2.1), mboost (2.0-6), mc2d (0.1-8), mclust (3.4.4), mcmc (0.8), mco (1.0.9),...