search for: lognet

Hi, My apologies for asking this question, but could not find the answer elsewhere. I understand the glmnet package uses Fortran code. For example, the lognet.R file includes the lines of code shown below. But how can I see the Fortran code that is being referenced in the code below? Is that provided somewhere in the package source code? .Fortran("lognet", parm=alpha,nobs,nvars,nc,as.double(x),y,offset,jd,vp,ne,nx,nlam,flmin,ulam,thresh,isd,m...

...0.5, nfolds=2) The error i get is: Error in if (outlist$msg != "Unknown error") return(outlist) : argument is of length zero If i change the number of folds to 1, i get a seg fault: *** caught segfault *** address 0x0, cause 'memory not mapped' Traceback: 1: .Fortran("lognet", parm = alpha, nobs, nvars, nc, as.double(x), y, offset, jd, vp, ne, nx, nlam, flmin, ulam, thresh, isd, maxit, kopt, lmu = integer(1), a0 = double(nlam * nc), ca = double(nx * nlam * nc), ia = integer(nx), nin = integer(nlam), nulldev = double(1), dev = double(nlam), alm...

Hello, I got an error message saying Error in lognet(x, is.sparse, ix, jx, y, weights, offset, alpha, nobs, : NA/NaN/Inf in foreign function call (arg 5) when I try to analysis a binary trait using glmnet(R) by running the following code library(glmnet) Xori <- read.table("c:\\SNP.txt", sep='\t'); Yori <- read.table(&quo...

Hi, I run R on a server via SSH, over a terminal. After loading a specific package, how do I know what functions are in that package? Is there any way to list or display them? tia. -- View this message in context: http://www.nabble.com/Check-functions-in-package-tp24707084p24707084.html Sent from the R help mailing list archive at Nabble.com.

Hi, I created a logistic regression model using the glmnet package. This model is of class "glmnet" or "lognet". I wanted to plot a calibration curve for this model using the calibrate() function from rms package, but the objects used are different, rms requires a fit from lrm(). Is there another function for getting the calibration plot for this glmnet object, or can anyone drop some hints as to how t...