search for: lockedenviron

Displaying 3 results from an estimated 3 matches for "lockedenviron".

2012 Jun 28
1
Merging listed dataset into one
Hello, I'm wondering how I can merge two featuresets into one. My dataset is two sets of microarray data and it looks like followings: > rawData $v1 TilingFeatureSet (storageMode: lockedEnvironment) assayData: 2197815 features, 59 samples element names: channel1, channel2 protocolData rowNames: LT290677RU_D1_2011-02-16 LT286300LU_D1_2010-07-24 ... LT003990RU_D1_2010-11-04 (59 total) varLabels: filenamesChannel1 filenamesChannel2 dates1 dates2 varMetadata: labelDescription ch...
2007 Dec 20
1
custom subset method / handling columns selection as logic in '...' parameter
...Control 0.35 V Female Control 0.77 W Male Control 0.27 X Male Control 0.98 Y Female Case 0.94 Z Female Case 0.32 # now the sample use > (subset1 =subset(expressionSet,sex="Male",type="Control")) 7 columns selected (C F J R U W X) ExpressionSet (storageMode: lockedEnvironment) assayData: 500 features, 7 samples element names: exprs, se.exprs phenoData sampleNames: C, F, ..., X (7 total) varLabels and varMetadata description: sex: Female/Male type: Case/Control score: Testing Score featureData featureNames: AFFX-MurIL2_at, AFFX-MurIL10_at, ..., 3...
2010 Nov 12
0
drosophila2cdf in simpleaffy / affyQCReport
...t ratio gapdh3/gapdhM AFFX-Dros-GAPDH_3_at AFFX-Dros-GAPDH_M_at this I copied as drosophila2cdf.qcdef to the cirectory: ../R/x86_64-pc-linux-gnu-library/2.12/simpleaffy/extdata/drosgenome2cdf.qcdef I than try to run the analysis again: > data <- ReadAffy() > data AffyBatch (storageMode: lockedEnvironment) assayData: NA features, NA samples element names: exprs protocolData sampleNames: 10_w1h_021110.CEL 11_wbh_021110.CEL ... 9_dch_021110.CEL (12 total) varLabels: ScanDate varMetadata: labelDescription phenoData sampleNames: 10_w1h_021110.CEL 11_wbh_021110.CEL ... 9_dch_021110.CEL...