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2011 Jan 28

2

R CMD INSTALL cannot find libf77blas

...sr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for pac...

Error message installing package R package

2013 Mar 21

1

Error message installing package R package

...;/share/apps/R-2.15.3/library/stats/include" -fpic -g -O2 -c lmer.c -o lmer.o gcc -std=gnu99 -I/share/apps/R-2.15.3/include -DNDEBUG -I/usr/local/include -I"/share/apps/R-2.15.3/library/Matrix/include" -I"/share/apps/R-2.15.3/library/stats/include" -fpic -g -O2 -c local_stubs.c -o local_stubs.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o lme4.so init.o lmer.o local_stubs.o -L/share/apps/R-2.15.3/lib -lRlapack -L/share/apps/R-2.15.3/lib -lRblas -lgfortran -lm /usr/bin/ld: cannot find -lgfortran collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR:...

LAPACK lib problem, lme4, lastest R, Linux

2010 Nov 13

1

LAPACK lib problem, lme4, lastest R, Linux

...ib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for pa...

Problem with lme4 package

2010 Dec 15

1

Problem with lme4 package

...lmer.c -o lmer.o gcc -std=gnu99 -I/usr/lib64/R/include -I/usr/local/include -I"/usr/lib64/R/library/Matrix/include" -I"/usr/lib64/R/library/stats/include" -fpic -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -c local_stubs.c -o local_stubs.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o lme4.so init.o lmer.o local_stubs.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: cannot find -lgfortran collec...

LAPACK libraries improperly linked

2010 Nov 14

3

LAPACK libraries improperly linked

...ib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for pa...

Problem with lm4 and lapack library

2010 Nov 15

0

Problem with lm4 and lapack library

...sr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -g -O2 -c lmer.c -o lmer.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -g -O2 -c local_stubs.c -o local_stubs.o gcc -std=gnu99 -shared -o lme4.so init.o lmer.o local_stubs.o -L/usr/lib64/R/lib -lRlapack -lblas -lgfortran -lm -lgcc_s -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lRlapack collect2: ld devolvi? el estado de salida 1 make: *** [lme4.so] Error 1 ERROR: compilation failed f...

problem installing rgdal

2011 Jan 16

1

problem installing rgdal

...clude -I/usr/include/gdal -I"/home/ale/R/i686-pc-linux- gnu-library/2.11/sp/include" -fpic -g -O2 -c gdal-bindings.cpp -o gdal- bindings.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/include/gdal -I"/home/ale/R/i686- pc-linux-gnu-library/2.11/sp/include" -fpic -g -O2 -c local_stubs.c -o local_stubs.o g++ -I/usr/share/R/include -I/usr/include/gdal -I"/home/ale/R/i686-pc-linux- gnu-library/2.11/sp/include" -fpic -g -O2 -c ogr_geom.cpp -o ogr_geom.o gcc -std=gnu99 -I/usr/share/R/include -I/usr/include/gdal -I"/home/ale/R/i686- pc-linux-gnu-library/2.11/sp/i...

Patchy 'front-end' package installation problems using -R- 2.15.1

2012 Jul 24

1

Patchy 'front-end' package installation problems using -R- 2.15.1

...usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -O3 -pipe -g -c lmer.c -o lmer.ogcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -O3 -pipe -g -c local_stubs.c -o local_stubs.ogcc -std=gnu99 -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR/usr/bin/ld: cannot find -llapack/usr/bin/ld: cannot find -lblas/usr/bin/ld: cannot find -lgfortrancollect2: ld returned 1 exit statusmake: *** [lme4.so] Error 1ERROR:...

LAPACK libraries improperly linked

2010 Nov 14

1

LAPACK libraries improperly linked

...led before installing R version 2.12.0 (2010-10-15) in accordance with the instructions on the CRAN site. All went well until I started to install the additional packages I use and found multiple cases of (e.g. for lme4) of the following compilation error: gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas ---------BUT [ 48 ] <wow> (ron) /usr/bin/R CMD config LAPACK_LIBS -llapack ---------AND <wow> (ron) dpkg -l | grep lapack ii liblap...

Installing sjPlot in R 3.4.4 on Ubuntu 16.04LTS

2018 Jul 01

2

Installing sjPlot in R 3.4.4 on Ubuntu 16.04LTS

...o init.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c local_stubs.c -o local_stubs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOUR...

How to still processing despite bug errors?

2011 Jan 17

2

How to still processing despite bug errors?

...-I"/home/ale/R/i686-pc-linux- > gnu-library/2.11/sp/include" -fpic -g -O2 -c gdal-bindings.cpp -o gdal- > bindings.o > gcc -std=gnu99 -I/usr/share/R/include -I/usr/include/gdal > -I"/home/ale/R/i686- > pc-linux-gnu-library/2.11/sp/include" -fpic -g -O2 -c local_stubs.c -o > local_stubs.o > g++ -I/usr/share/R/include -I/usr/include/gdal > -I"/home/ale/R/i686-pc-linux- > gnu-library/2.11/sp/include" -fpic -g -O2 -c ogr_geom.cpp -o ogr_geom.o > gcc -std=gnu99 -I/usr/share/R/include -I/usr/include/gdal > -I"/home/ale/R/i686- &...

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