search for: lmkl_rt

...imple approach, I just compiled the current R release > on Ubuntu with ICC and MKL using just this: > > $ tar -xzf R-3.2.2.tar.gz > $ cd R-3.2.2 > $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g > -O3 -xHost" ./configure --with-blas="-lmkl_rt -lpthread" --with-lapack > --enable-memory-profiling --enable-R-shlib > $ make > $ sudo make install > $ R --version > R version 3.2.2 (2015-08-14) -- "Fire Safety" That is exactly the right combo: with-blas="-lmkl_rt -lpthread" Nothing more for $MKL now $...

...ud -- > > I'm glad it's working for you. I'm not sure I understand your final > answer. Are you saying that the version I posted worked for you as > given, or that you had to remove some of the other options? I say it works perfectly when using the single dynamic library (lmkl_rt): MKL=" -L${_mkllibpath} -lmkl_rt -lpthread -lm" N.B: not sure the -lm is needed, and It builds without it. It seems it may trigger some issues on. See[0]. Thus I removed it > Perhaps you could post the full final recipe in a way that others can > copy and paste if they find this...

...t as Debian/Ubuntu packages available on CRAN mirror, the following tricks may works for without some known side-effects (likes openmp breaking issues), you may try to build your own libblas.so.3gf.0 with following command: $ gfortran -L/opt/intel/lib/intel64 -liomp5 -L/opt/intel/mkl/lib/intel64 -lmkl_rt -lmkl_core -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_gf_ilp64 -lgomp -lpthread -shared -Wl,-soname,libblas.so.3gf -o libblas.so.3gf. $ sudo mkdir /usr/local/lib/MKL $ sudo cp libblas.so.3gf.0 /usr/local/lib/MKL/. $ cd /usr/local/lib/MKL $ sudo ln -s libblas.so.3gf.0 libblas.so.3gf $ sudo -s $ echo &quo...

On Sat, 2015-09-05 at 11:53 +0200, arnaud gaboury wrote: > On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote: > > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > >> > After a few days of reading and headache, I finally gave a try at

...ompiled the current R release >> on Ubuntu with ICC and MKL using just this: >> >> $ tar -xzf R-3.2.2.tar.gz >> $ cd R-3.2.2 >> $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g >> -O3 -xHost" ./configure --with-blas="-lmkl_rt -lpthread" --with-lapack >> --enable-memory-profiling --enable-R-shlib >> $ make >> $ sudo make install >> $ R --version >> R version 3.2.2 (2015-08-14) -- "Fire Safety" > > > That is exactly the right combo: with-blas="-lmkl_rt -lpthread&q...