Displaying 15 results from an estimated 15 matches for "lmkl_intel_thread".
2009 Mar 16
6
R with MKL
...ase it helps and to ask one
question. I installed R-2.8.1.patched in Ubuntu 9.04 (gcc 4.3.3) using
MKL 10.1.1.019.
I configured correctly (following MKL userguide) with :
sudo ./configure --with-blas="-I/opt/intel/mkl/10.1.1.019/include
-L/opt/intel/mkl/10.1.1.019/lib/em64t -lmkl_intel_lp64
-lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
--with-lapack="-I/opt/intel/mkl/10.1.1.019/include
-L/opt/intel/mkl/10.1.1.019/lib/em64t -lmkl_intel_lp64
-lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
But in order to compile had to edit src/modules/lapack/vecLibg95c.c
and comment out the include. W...
2009 Mar 16
6
R with MKL
...ase it helps and to ask one
question. I installed R-2.8.1.patched in Ubuntu 9.04 (gcc 4.3.3) using
MKL 10.1.1.019.
I configured correctly (following MKL userguide) with :
sudo ./configure --with-blas="-I/opt/intel/mkl/10.1.1.019/include
-L/opt/intel/mkl/10.1.1.019/lib/em64t -lmkl_intel_lp64
-lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
--with-lapack="-I/opt/intel/mkl/10.1.1.019/include
-L/opt/intel/mkl/10.1.1.019/lib/em64t -lmkl_intel_lp64
-lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
But in order to compile had to edit src/modules/lapack/vecLibg95c.c
and comment out the include. W...
2015 Sep 04
2
Build R with MKL and ICC
...gt; > source /opt/intel/bin/compilervars.sh intel64
> > _mkllibpath=$MKLROOT/lib/intel64
> > _icclibpath=$MKLROOT/linux/compiler/lib
> > export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
> > export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp64
> > -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
> > export CC="icc"
> > export F77="ifort"
> > export CXX="icpc"
> > export AR="xiar"
> > export LD="xild"
> > export CFLAGS="-O3 -ipo -openmp -parallel -xAVX"
> &g...
2015 Sep 02
4
Build R with MKL and ICC
...pilers_and_libraries_2016/linux/mkl/bin/mklvars.sh intel64
source /opt/intel/bin/compilervars.sh intel64
_mkllibpath=$MKLROOT/lib/intel64
_icclibpath=$MKLROOT/linux/compiler/lib
export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp64
-lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
export CC="icc"
export F77="ifort"
export CXX="icpc"
export AR="xiar"
export LD="xild"
export CFLAGS="-O3 -ipo -openmp -parallel -xAVX"
export CXXFLAGS="-O3 -ipo -openmp -parallel -xAVX"
export...
2020 Jul 10
3
Compilation error for R 4.0.2
...ude -I${CURLDIR}/include
-I${PCRE2DIR}/include "
setenv CXXFLAGS " ${CFLAGS} "
setenv FFLAGS " ${CFLAGS} "
setenv FCFLAGS " ${CFLAGS} "
setenv LDFLAGS " -Wl,-rpath=${MKLROOT}/lib/intel64_lin
-L${MKLROOT}/lib/intel64_lin -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core
-Wl,-rpath=/uufs/
chpc.utah.edu/sys/installdir/intel/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64_lin
-L/uufs/
chpc.utah.edu/sys/installdir/intel/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64_lin...
2017 Apr 21
1
Intel MKL compiling issue
...ICC_OPT="-mkl -xHOST -fp-model strict"
export CC="icc $ICC_OPT"
export CXX="icpc $ICC_OPT"
export FC="ifort -mkl -xHOST"
export F77="ifort -mkl -xHOST"
export FPICFLAGS=" -fPIC"
export AR=xiar
export LD=xild
export MKL="-lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
./configure --with-x=no --with-blas=-lmkl
2013 Dec 02
1
Arithmetic Error while compiling R with the Intel compilers
...gns. Is such behaviour is normal or there is any issue
with the Intel libraries. I used some of the libraries from Intel MKL
like fftw, mkl_lapack etc. I am pasting below the command that I used to
configure this R package.
./configure --prefix=$INSTALL_DIR --with-blas="-lmkl_intel_lp64
-lmkl_intel_thread -lmkl_lapack -lmkl_core -lpthread -lfftw3xf_intel
-lfftw3xc_intel" --with-lapack
I also tried installing using Intel compilers without using
Intel MKL libraries. It was done using below command.
./configure --prefix=$INSTALL_DIR
Exactly same errors were there.
T...
2012 Dec 28
1
linux multi-threaded compilation is running only on one processor
...PATH},-L${INC_LIB_PATH},-L${CMP_LIB_PATH},-Bdirect,--hash-style=both,-Wl,-O1"
export SHLIB_LDFLAGS="-lpthread"
export SHLIB_CXXLDFLAGS="-lpthread"
export MAIN_LDFLAGS="-lpthread"
MKL="-L${MKL_LIB_PATH} -L${INC_LIB_PATH} -lmkl_lapack95_lp64
-lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
./configure --prefix=${INSTALL_DIR} --enable-R-shlib
--with-blas="$MKL" --with-lapack
2015 Sep 02
0
Build R with MKL and ICC
...x/mkl/bin/mklvars.sh intel64
> source /opt/intel/bin/compilervars.sh intel64
> _mkllibpath=$MKLROOT/lib/intel64
> _icclibpath=$MKLROOT/linux/compiler/lib
> export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
> export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp64
> -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
> export CC="icc"
> export F77="ifort"
> export CXX="icpc"
> export AR="xiar"
> export LD="xild"
> export CFLAGS="-O3 -ipo -openmp -parallel -xAVX"
> export CXXFLAGS="-O3 -ipo -...
2015 Sep 05
0
Build R with MKL and ICC
.../intel/bin/compilervars.sh intel64
>> > _mkllibpath=$MKLROOT/lib/intel64
>> > _icclibpath=$MKLROOT/linux/compiler/lib
>> > export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
>> > export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp64
>> > -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
>> > export CC="icc"
>> > export F77="ifort"
>> > export CXX="icpc"
>> > export AR="xiar"
>> > export LD="xild"
>> > export CFLAGS="-O3 -ipo -openmp -para...
2015 Sep 07
2
Build R with MKL and ICC
...h intel64
> >> > _mkllibpath=$MKLROOT/lib/intel64
> >> > _icclibpath=$MKLROOT/linux/compiler/lib
> >> > export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
> >> > export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp64
> >> > -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
> >> > export CC="icc"
> >> > export F77="ifort"
> >> > export CXX="icpc"
> >> > export AR="xiar"
> >> > export LD="xild"
> >> > export CFLAG...
2020 Jun 24
5
R 4.0.1-4.0.2 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7
...openmp -axAVX,CORE-AVX2,CORE-AVX512"
export F77FLAGS="-O3 -ipo -qopenmp -axAVX,CORE-AVX2,CORE-AVX512"
export FFLAGS="-O3 -ipo -qopenmp -axAVX,CORE-AVX2,CORE-AVX512"
export CXXFLAGS="-O3 -ipo -qopenmp -axAVX,CORE-AVX2,CORE-AVX512"
export MKL="-lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
VERSION=4.0.1
/scratch/novosirj/install-files/R-${VERSION}/configure --with-blas="$MKL" --with-lapack --prefix=/opt/sw/packages/intel-19_1/R-Project/${VERSION} && \
make -j32 && make check && make -j32 install
However, t...
2020 Jul 11
0
Compilation error for R 4.0.2
...PCRE2DIR}/include ......"
make
Hth
-k
> setenv CXXFLAGS " ${CFLAGS} "
> setenv FFLAGS " ${CFLAGS} "
> setenv FCFLAGS " ${CFLAGS} "
> setenv LDFLAGS " -Wl,-rpath=${MKLROOT}/lib/intel64_lin
> -L${MKLROOT}/lib/intel64_lin -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core
> -Wl,-rpath=/uufs/
> chpc.utah.edu/sys/installdir/intel/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64_lin
> -L/uufs/
> chpc.utah.edu/sys/installdir/intel/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel6...
2020 Jun 25
0
R 4.0.1-4.0.2 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7
...VX2,CORE-AVX512"
> export F77FLAGS="-O3 -ipo -qopenmp -axAVX,CORE-AVX2,CORE-AVX512"
> export FFLAGS="-O3 -ipo -qopenmp -axAVX,CORE-AVX2,CORE-AVX512"
> export CXXFLAGS="-O3 -ipo -qopenmp -axAVX,CORE-AVX2,CORE-AVX512"
> export MKL="-lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
>
> VERSION=4.0.1
>
> /scratch/novosirj/install-files/R-${VERSION}/configure --with-blas="$MKL" --with-lapack --prefix=/opt/sw/packages/intel-19_1/R-Project/${VERSION} && \
> make -j32 && make check && make -...
2013 Jun 07
1
cannot load pbdMPI package after compilation
Hello,
I try to install pbdMPI.
Compilation successful, but load fails with segfault.
Is anyone can help me?
R version 3.0.0
pbdMPI version 0.1-6
Intel compiler version 13.1.1
OpenMPI version 1.6.4-1
CPU Intel x86_64
# R CMD INSTALL pbdMPI_0.1-6.tar.gz
..
....
checking for gcc... icc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name...