search for: lmkl_gnu_thread

...ble on CRAN mirror, the following tricks may works for without some known side-effects (likes openmp breaking issues), you may try to build your own libblas.so.3gf.0 with following command: $ gfortran -L/opt/intel/lib/intel64 -liomp5 -L/opt/intel/mkl/lib/intel64 -lmkl_rt -lmkl_core -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_gf_ilp64 -lgomp -lpthread -shared -Wl,-soname,libblas.so.3gf -o libblas.so.3gf. $ sudo mkdir /usr/local/lib/MKL $ sudo cp libblas.so.3gf.0 /usr/local/lib/MKL/. $ cd /usr/local/lib/MKL $ sudo ln -s libblas.so.3gf.0 libblas.so.3gf $ sudo -s $ echo "/usr/local/lib/MKL" > /etc/ld.so...

...t all. My config.site file for R is: #! /bin/sh R_PAPERSIZE=letter CFLAGS="-g -O2 -p -pg" CPPFLAGS="-I/opt/intel/mkl/10.0.1.014/include -I/usr/include -I/usr/local/include" LIBnn=lib64 BLAS_LIBS="-L/opt/intel/mkl/10.0.1.014/lib/em64t -Wl,--start-group -lmkl_gf_lp64.so -lmkl_gnu_thread.so -lmkl_core.so -l -l -l -Wl, --end-group -lguide -lpthread -lm" I have set the CONFIG_SITE environment variable to the location of the config.site.file. I am doing everything as superuser. The command I am using for configure is ./configure --disable-R-profiling --with-blas=no followin...

...in/mklvars.sh intel64 CPPFLAGS="-I/genetics/data/software/include -L/genetics/data/software/lib" \ ./configure --prefix=/genetics/data/software --enable-R-shlib --enable-threads=posix --with-lapack \ --with-blas="-fopenmp -m64 -I$MKLROOT/include -L$MKLROOT/lib/intel64 -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_core -lpthread -lm" Many thanks, Jing Hua [[alternative HTML version deleted]]

...MKL=/home/jhz22/11.3.3.210/mkl export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64 ./configure --prefix=/home/jhz22 LDFLAGS=-L/home/jhz22/lib CPPFLAGS=-I/home/jhz22/include \ --enable-R-shlib --with-lapack \ --with-blas="-fopenmp -m64 -I$MKL/include -L$MKL/lib/intel64 -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_core -lpthread -lm" The errors are as follows, /usr/bin/ld: warning: libpcre.so.1, needed by ../../lib/libR.so, not found (try using -rpath or -rpath-link) /usr/bin/ld: warning: liblzma.so.5, needed by ../../lib/libR.so, not found (try using -rpath or -rpath-link) ../../lib/libR.so:...

...-m64 -mtune=generic -c fastLm.cpp -o fastLm.o g++ -shared -L/tools/cluster/6.2/R/3.2.2_mkl/lib64/R/lib -L/usr/local/lib64 -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -L/panfs/pfs.acf.ku.edu/cluster/6.2/intel/2015/mkl/lib/intel64 -Wl,--no-as-needed -lmkl_gf_lp64 -Wl,--start-group -lmkl_gnu_thread -lmkl_core -Wl,--end-group -fopenmp -ldl -lpthread -lm -lgfortran -lm -L/tools/cluster/6.2/R/3.2.2_mkl/lib64/R/lib -lR installing to /panfs/pfs.acf.ku.edu/crmda/tools/lib64/R/3.2/site-library/RcppArmadillo/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices *...

....080; tried the following resources: http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor http://cran.r-project.org/doc/manuals/R-admin.html#MKL http://software.intel.com/en-us/comment/reply/328415 and getting the following: *checking for dgemm_ in -Wl,--start-group -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_core -Wl,--end-group -lgomp -lpthread... no* *checking for dgemm_... no* libblas.so.3 => /usr/lib/libblas.so.3 (0x00007f8daec19000) libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f8dae915000) libgomp.so.1 => /usr/lib/x86_64-linux-gnu/libgomp.so.1 (0x00007f8dade9400...

...0microsoft.com%7c80ae9ec8fef04c42eed808d2f42bf31d%7c72f988bf86f141af91ab2d7cd011db47%7c1&sdata=AwdY1xC74H25uBIyciugr9HeuGhYhnDGKoQkeDUhpeQ%3d RcppArmadillo.o RcppExports.o fastLm.o -L/panfs/pfs.acf.ku.edu/cluster/6.2/intel/2015/mkl/lib/intel64 -Wl,--no-as-needed -lmkl_gf_lp64 -Wl,--start-group -lmkl_gnu_thread -lmkl_core -Wl,--end-group -fopenmp -ldl -lpthread -lm -lgfortran -lm -L/tools/cluster/6.2/R/3.2.2_mkl/lib64/R/lib -lR installing to /panfs/pfs.acf.ku.edu/crmda/tools/lib64/R/3.2/site-library/RcppArmadillo/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices *...

Hi! I've been playing with MKL for a few days and I noticed the instructions in the R Installation Administration manual [1] no longer apply. It seems that since version 10.0 (the one used by the manual), libmkl_lapack.so has been renamed/split (although the official explanations seem to imply this was already the case in 10.0 [2]). As a consequence, the instructions for dynamic linking no

...S/LAPACK: /opt/intel/oneapi_2022.2.0/mkl/2022.1.0/lib/intel64/libmkl_intel_lp64.so.2; LAPACK version 3.9.0 is correct? Is these a way to avoid arithmetic issue? My configure is: module load intel-2021.6.0/2021.6.0 oneapi-2022.1.0/mkl MKL="-L${MKLROOT}/lib/intel64 -lmkl_gf_lp64 -lmkl_core -lmkl_gnu_thread -dl -fopenmp" export CC="icc -std=c99" export CFLAGS="-g -O3 -wd188 -ip -mp" export FC=ifort export FLAGS="-g -O3 -mp" export CXX=icpc export CXXFLAGS="-g -O3 -mp" SHLIB_CXXLD=icpc export MKL_INTERFACE_LAYER=GNU,LP64 export MKL_THREADING_LAYER=GNU ./con...

...ntel64 > CPPFLAGS="-I/genetics/data/software/include -L/genetics/data/software/lib" \ > ./configure --prefix=/genetics/data/software --enable-R-shlib --enable-threads=posix --with-lapack \ > --with-blas="-fopenmp -m64 -I$MKLROOT/include -L$MKLROOT/lib/intel64 -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_core -lpthread -lm" > > > Many thanks, > > > > Jing Hua > > [[alternative HTML version deleted]] > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- B...

...LAPACK version 3.9.0 >> >> is correct? >> >> Is these a way to avoid arithmetic issue? >> >> My configure is: >> >> module load intel-2021.6.0/2021.6.0 oneapi-2022.1.0/mkl >> MKL="-L${MKLROOT}/lib/intel64 -lmkl_gf_lp64 -lmkl_core >> -lmkl_gnu_thread -dl -fopenmp" >> export CC="icc -std=c99" >> export CFLAGS="-g -O3 -wd188 -ip -mp" >> export FC=ifort >> export FLAGS="-g -O3 -mp" >> export CXX=icpc >> export CXXFLAGS="-g -O3 -mp" >> SHLIB_CXXLD=icpc >> e...

Hi r-devel, a recent install of R-3.4.0 RC (2017-04-13 r72510)? on Linux (Ubuntu 16.04.1 LTS) x86_64-linux-gnu? with?g++ (Ubuntu 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609 (see?http://bioconductor.org/checkResults/devel/bioc-LATEST/malbec2-NodeInfo.html?for more)? results in CXXFLAGS not containing "-O2" as optimisation flag, there is only " -Wall", while?CFLAGS are happy with