search for: lmkl

...and with earlier versions of R as well) using external BLAS and LAPACK libraries _and_ generating libR.so, libRblas.so and libRlapack.so. Without --enable-BLAS-shlib, configure is able to find and use the external LAPACK library: ./configure \ --with-blas="-L/site/intel/cmkl/8.1/lib/em64t -lmkl -lvml -lguide -lpthread" \ --with-lapack="-L/site/intel/cmkl/8.1/lib/em64t -lmkl_lapack64 -lmkl" \ --enable-R-shlib [...] External libraries: readline, BLAS(generic), LAPACK(generic) Additional capabilities: PNG, JPEG, iconv, MBCS, NLS Options enabled: sh...

Hi all, I'm trying to build R from subversion with MKL 10.0.2 on Ubuntu. I tried: ./configure --with-blas='-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lguide' --with-lapack='/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lmkl_lapack' --enable-R-shlib and got: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/local C compiler: gcc -std=gnu99 -g -O2 For...

Hi all, I'm trying to build R from subversion with MKL 10.0.2 on Ubuntu. I tried: ./configure --with-blas='-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lguide' --with-lapack='/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lmkl_lapack' --enable-R-shlib and got: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/local C compiler: gcc -std=gnu99 -g -O2 For...

...tried several with several libraries: # ACML: export LD_LIBRARY_PATH=/site/VERSIONS/acml-3.6.0/gfortran64_int64/lib BLAS=--with-blas="-L/site/VERSIONS/acml-3.6.0/gfortran64_int64/lib -lacml" LAPACK=--with-lapack # MKL 11: BLAS=--with-blas="-L/site/VERSIONS/intel-11.1/mkl/lib/em64t -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -lmkl_core" LAPACK=--with-lapack # MKL 8.1, trad. way: BLAS=--with-blas="-L/site/intel/cmkl/8.1/lib/em64t -lmkl -lvml -lguide -lpthread" LAPACK=--with-lapack I configure R like this: export CFLAGS="-O3 -mtune=opteron" export FFLAGS=&...

From: Matt Fleming <matt at console-pimps.org> Uncovered a bug in avr32 signal handling, might come handy in testing other archs signal. Signed-off-by: Matt Fleming <matt at console-pimps.org> Signed-off-by: maximilian attems <max at stro.at> --- Seen on lmkl, any objections to add your test to klibc: http://git.kernel.org/?p=libs/klibc/klibc.git;a=summary We know archs were signal stuff is trouble some: x86_32, m68k, .. Thank you. usr/klibc/tests/Kbuild | 1 + usr/klibc/tests/sig-nodefer.c | 55 +++++++++++++++++++++++++++++++++++++++++...

...export ICC_OPT="-mkl -xHOST -fp-model strict" export CC="icc $ICC_OPT" export CXX="icpc $ICC_OPT" export FC="ifort -mkl -xHOST" export F77="ifort -mkl -xHOST" export FPICFLAGS=" -fPIC" export AR=xiar export LD=xild export MKL="-lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread" ./configure --with-x=no --with-blas=-lmkl

I believe that actually means configure was able to use the BLAS you specified (MKL in this case). You can scan through config.log to make sure. Andy > From: > > Fedora Core 3 > > I installed the Intel MLk, > > and tried : --with-blas="-lmkl -lguide -lpthread" > > and got : External libraries: readline, BLAS(generic) > > thus I'm assuming I'm missing something when telling config where to > look for the recently installed Intel BLAS? > > thanks for all replies thus far. > > > On...

I would like to build R and packages with the Intel 10.1 compilers in RHEL4. Using the flags below, I can successfully build R using a vanilla ./configure, but when I install new packages they build with gcc. My sysadmin suggested adding the flags to ./configure as illustrated below, but then the R build blows up with the config tail output that follows far below. It looks like gcc is still being

...iles, and which libraries to use depend on the platform and compiler, this requires a bit of setup to get working. For me, the correct configure line is: bash autogen.sh && CFLAGS="-O2 -g -I/opt/intel/mkl/10.0.3.020/include/" LDFLAGS="-L/opt/intel/mkl/10.0.3.020/lib/em64t -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lm" ./configure --with-intel-mkl If you use the intel compiler, you can replace all of the '-lmkl_xx' with a single '-lmkl', and if you want threaded support, replace mkl_sequential with mkl_gnu_thread. If there are anyone from Intel...

...compilers using the following options: CFLAGS = '-O2 -mp -prec_div' CXXFLAGS = '-O2 -mp -prec_div' FFLAGS = '-C90 -w90 -w95 -mp -prec_div' CPIPCFLAGS = -shared CXXPIPCFLAGS = -shared FPIPCFLAGS = -shared SHLIB_LDFLAGS = -shared SHLIB_CXXLDFLAGS = -shared --with-blas = '-lmkl -lguide -lpthread' The compilation went fine (just a few warnings). There was apparently a single problem when I ran "make check". It was in: d-p-q-r-tests.R at line 469: All.eq(dpois( 10, 2e-308, log=TRUE), -7100.13502718914) which returned -Inf with the Intel compiled version...

Full_Name: Reinhold Bader Version: 2.1.0 OS: SLES 9 Submission from: (NULL) (129.187.48.1) I tried to build R using the Intel compilers (icc, ifort) and the Math Kernel Libraries for BLAS/LAPACK Optimizations used were -O3, and the FPICFLAGS="-fpic" was exported. The build failed with the following error message: ... dumping R code in package 'methods' Saving namespace image

Dear R friends My goal is to eliminate this specific group(1) if the # of NAs in this group greater than 50%(specifically say greater than 3). Would you please show me how to do it. I have a sample data as following: Thanks a lot. Kevin Lin y group f1 f2 f3 30 NA 1 1 1 1 27 NA 1 1 2 2 48 NA 1 2 1 2 40 -0.6066416 1 2 2 1 24

hello hpa, pulled in latest dash containing your jobcontrol patch and fixed faccessat() in klibc on the way. the build of this needs lmkl fix: http://marc.info/?l=linux-kernel&m=127138736217956&w=2 patch queue otherwise similar to previous pull request, please pull: git pull git://git.debian.org/users/maks/klibc.git maks Aleksey Cheusov (1): [klibc] [BUILD] Fixed build on NetBSD Colin Watson (1): [klibc] fsty...

...the Intel BLAS at all. My config.site file for R is: #! /bin/sh R_PAPERSIZE=letter CFLAGS="-g -O2 -p -pg" CPPFLAGS="-I/opt/intel/mkl/10.0.1.014/include -I/usr/include -I/usr/local/include" LIBnn=lib64 BLAS_LIBS="-L/opt/intel/mkl/10.0.1.014/lib/em64t -Wl,--start-group -lmkl_gf_lp64.so -lmkl_gnu_thread.so -lmkl_core.so -l -l -l -Wl, --end-group -lguide -lpthread -lm" I have set the CONFIG_SITE environment variable to the location of the config.site.file. I am doing everything as superuser. The command I am using for configure is ./configure --disable-R-profil...