search for: lminfl

Greetings! Recently when I tried to use lm.influence I get the following error: Error in .Fortran("lminfl", model$qr$qr, n, n, k, as.integer(do.coef), : Fortran symbol name "lminfl" not in DLL for package "base" This occurs on both Linux and Windows platforms (details below). Searching the mail lists and other sources indicates that the fortran code for lminfluence (lminfl...

...v1.2.1 under Digital Unix 4.0D. The configure-script runs without any problems but during 'make' I receive the following error-message: [......] g77 -mieee -g -O2 -c dtrco.f -o dtrco.o g77 -mieee -g -O2 -c dtrsl.f -o dtrsl.o g77 -mieee -g -O2 -c eigen.f -o eigen.o g77 -mieee -g -O2 -c lminfl.f -o lminfl.o ar cr libappl.a Rsock.o approx.o bakslv.o binning.o chisqsim.o chull.o cpoly.o cumsum.o distance.o fft.o fmin.o fortran.o lbfgsb.o loglin.o lowess.o machar.o maxcol.o massdist.o pretty.o rowsum.o sock.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o ch...

(R 0.65.0 and earlier): example(aov) lm.influence(npk.aov) gives Error: NA/NaN/Inf in foreign function call (arg 6) which comes from the lm.obj$coefficients (the last 3-way interaction coefficient is indetermined and accordingly NA) argument passed to .Fortran("lminfl",...) inside lm.influence. The following is a simple correct patch --- lm.influence.R 1999/08/13 06:44:12 1.5 +++ lm.influence.R 1999/09/15 15:32:11 @@ -38,6 +38,7 @@ hat = double(n), coefficients = matrix(0, nr = n, nc = k), sigma = double(n), + NAOK = TRUE...

....o fmin.o fortran.o lbfgsb.o loglin.o lowess.o mac har.o massdist.o pretty.o pythag.o rowsum.o sock.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpo fa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o e igen.o lminfl.o blas.o make[3]: cr: Command not found make[3]: *** [libappl.a] Error 127 make[3]: Leaving directory `/home/ppp/paradis/R/R-1.0.1/src/appl' make[2]: *** [R] Error 2 make[2]: Leaving directory `/home/ppp/paradis/R/R-1.0.1/src/appl' make[1]: *** [R] Error 1 make[1]: Leaving directory `/home/...

Dear all, The following works with a simple result of lm but gives the error with a more complicated one (could this be due to singularities that occurr in the model?). > cooks.distance (X) Error: NAs in foreign function call (arg 6) > class (X) [1] "lm" But, actually, I would like to ask a more general question: Is there a place (I searched in the CRAN site) where I find

..._ my guess at important parts from the make: ... make[3]: Entering directory `/home/mfa5/gilp/R/R-1.3.1.gnu3.0.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c approx.c -o approx.o ... g77 -g -O2 -c eigen.f -o eigen.o g77 -g -O2 -c lminfl.f -o lminfl.o g77 -g -O2 -c blas.f -o blas.o ar cr libappl.a approx.o bakslv.o binning.o chull.o cpoly.o cumsum.o fft.o fmin.o integrate.o lbfgsb.o loglin.o lowess.o machar.o maxcol.o massdist.o pretty.o rowsum.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dpbfa.o dp...

...in.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim .o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram .o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L../../../../lib -lRlapack -lgfortran - lm /opt/lib/gcc/powerpc-ibm-aix5.3.0.0/4.7.4/libgcc.a -lg -lm /opt/lib/libintl.a /opt/lib/libiconv.a -lpthread The result has duplicate symbols: With comments: gcc -Wl,-bnoquiet -std=gnu99 -shared -Wl,-brtl -Wl,-G -Wl,-bexpall -Wl,-bnoentry -o...

On 2015-10-15 15:02, Prof Brian Ripley wrote: > On 15/10/2015 13:32, Michael Felt wrote: >> Hi. >> >> Just wanted to let you know I am getting close to packaging R for AIX in rephrase - would like to be active in keeping R binaries current for AIX. My interest in not in R per se (rather a colleague who has a project that uses R, so I hope to assist him, and others like him).

...interv.o lbfgsb.o loglin.o lowess.o machar.o maxcol.o massdist.o pretty.o rcont.o rowsum.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o lminfl.o blas.o zgemm.o make[3]: *** [libappl.a] Error 1 make[3]: Leaving directory `/home/gruen/Applications/R-2.0.1/src/appl' make[2]: *** [R] Error 2 make[2]: Leaving directory `/home/gruen/Applications/R-2.0.1/src/appl' make[1]: *** [R] Error 1 make[1]: Leaving directory `/home/gruen/Applicat...

...1 2 3 4 5 6 2.62840627 -0.88476903 -1.09492912 0.20247856 -0.23114458 -0.95123387 7 8 0.07521515 0.30208051 Use of debug( lm.influence ) indicates the NaN appears in this line of lm.influence: res <- .Fortran("lminfl", model$qr$qr, n, n, k, as.integer(do.coef), model$qr$qraux, wt.res = e, hat = double(n), coefficients = if (do.coef) matrix(0, n, k) else double(0), sigma = double(n), tol = 10 * .Machine$double.eps, DUP = FALSE, PACKAGE = "base")[c("hat", "coeffi...

...dqrcf: dqrrsd: dqrxb: f77 -c dsvdc.f -o dsvdc.o dsvdc.f: dsvdc: f77 -c dtrsl.f -o dtrsl.o dtrsl.f: dtrsl: gcc -g -O2 -I../include -c eigen.c gcc -g -O2 -I../include -c fortran.c gcc -g -O2 -I../include -c fft.c f77 -c fmin.f -o fmin.o fmin.f: fmin: f77 -c lminfl.f -o lminfl.o lminfl.f: lminfl: gcc -g -O2 -I../include -c lowess.c gcc -g -O2 -I../include -c machar.c gcc -g -O2 -I../include -c massdist.c gcc -g -O2 -I../include -c pretty.c gcc -g -O2 -I../include -c splines.c gcc -g -O2 -I../include -c stem.c gcc -g -O2 -I../include -c strsignif.c gcc...

...o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -L../../../../lib -lRblas -lg2c -lm -lgcc_s -L../../../../lib -lR make[5]: Leaving directory `/mnt/Bioinformatics/dbest/R-2.6.1/src/library/stats/src' make[4]: Leaving directory `/mnt/Bioinformatics/dbest/R-2.6.1/src/library/stats/src' Error in namespaceExport(ns, exports) : undefined...

...l.f -o dql.o f77 -c dqrutl.f -o dqrutl.o f77 -c dsvdc.f -o dsvdc.o f77 -c dtrsl.f -o dtrsl.o cc -ieee_with_inexact -g -I../../src/include -c eigen.c cc -ieee_with_inexact -g -I../../src/include -c fortran.c cc -ieee_with_inexact -g -I../../src/include -c fft.c f77 -c fmin.f -o fmin.o f77 -c lminfl.f -o lminfl.o cc -ieee_with_inexact -g -I../../src/include -c lowess.c cc -ieee_with_inexact -g -I../../src/include -c machar.c cc -ieee_with_inexact -g -I../../src/include -c massdist.c cc -ieee_with_inexact -g -I../../src/include -c pretty.c cc -ieee_with_inexact -g -I../../src/include -c sp...

...-o dqrutl.o gcc -g -I../include -c dsvdc.c -o dsvdc.o gcc -g -I../include -c dtrsl.c -o dtrsl.o gcc -g -I../include -c eigen.c -o eigen.o gcc -g -I../include -c fortran.c -o fortran.o gcc -g -I../include -c fft.c -o fft.o gcc -g -I../include -c fmin.c -o fmin.o gcc -g -I../include -c lminfl.c -o lminfl.o gcc -g -I../include -c lowess.c -o lowess.o gcc -g -I../include -c machar.c -o machar.o gcc -g -I../include -c massdist.c -o massdist.o gcc -g -I../include -c pretty.c -o pretty.o gcc -g -I../include -c splines.c -o splines.o gcc -g -I../include -c stem.c -o stem.o gcc -g...

...-o dsvdc.o f77 -c dtrco.f -o dtrco.o f77 -c dtrsl.f -o dtrsl.o gcc -g -O2 -I../include -I../../src/include -c eigen.c -o eigen.o gcc -g -O2 -I../include -I../../src/include -c fortran.c -o fortran.o gcc -g -O2 -I../include -I../../src/include -c fft.c -o fft.o f77 -c fmin.f -o fmin.o f77 -c lminfl.f -o lminfl.o gcc -g -O2 -I../include -I../../src/include -c lowess.c -o lowess.o gcc -g -O2 -I../include -I../../src/include -c machar.c -o machar.o gcc -g -O2 -I../include -I../../src/include -c massdist.c -o massdist.o gcc -g -O2 -I../include -I../../src/include -c pretty.c -o pretty.o gcc -...

...-o dsvdc.o f77 -c dtrco.f -o dtrco.o f77 -c dtrsl.f -o dtrsl.o gcc -g -O2 -I../include -I../../src/include -c eigen.c -o eigen.o gcc -g -O2 -I../include -I../../src/include -c fortran.c -o fortran.o gcc -g -O2 -I../include -I../../src/include -c fft.c -o fft.o f77 -c fmin.f -o fmin.o f77 -c lminfl.f -o lminfl.o gcc -g -O2 -I../include -I../../src/include -c lowess.c -o lowess.o gcc -g -O2 -I../include -I../../src/include -c machar.c -o machar.o gcc -g -O2 -I../include -I../../src/include -c massdist.c -o massdist.o gcc -g -O2 -I../include -I../../src/include -c pretty.c -o pretty.o gcc -...

Recent sensible changes to the dynload mechanism have made an old problem resurface: how should we deal with packages which contain Fortran code and may need to be linked against additional libraries such as -lf2c? The current consensus is that extra Fortran libraries maybe needed are handled via the make variable FLIBS, and that `-lf2c' or `-lg2c' are added by default if g77 is used.

...-O2 -c dqrdc2.f -o dqrdc2.o g77 -g -O2 -c dqrls.f -o dqrls.o g77 -g -O2 -c dqrsl.f -o dqrsl.o g77 -g -O2 -c dqrutl.f -o dqrutl.o g77 -g -O2 -c dsvdc.f -o dsvdc.o g77 -g -O2 -c dtrco.f -o dtrco.o g77 -g -O2 -c dtrsl.f -o dtrsl.o g77 -g -O2 -c eigen.f -o eigen.o g77 -g -O2 -c lminfl.f -o lminfl.o ar cr libappl.a approx.o bakslv.o bandwidths.o binning.o chull.o cpoly.o cumsum.o fft.o fmin.o integrate.o lbfgsb.o loglin.o lowess.o machar.o maxcol.o massdist.o pretty.o rowsum.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2in v.o chol.o dpbfa.o dpbsl.o...

...g77 -g -O2 -c dqrdc2.f -o dqrdc2.o g77 -g -O2 -c dqrls.f -o dqrls.o g77 -g -O2 -c dqrsl.f -o dqrsl.o g77 -g -O2 -c dqrutl.f -o dqrutl.o g77 -g -O2 -c dsvdc.f -o dsvdc.o g77 -g -O2 -c dtrco.f -o dtrco.o g77 -g -O2 -c dtrsl.f -o dtrsl.o g77 -g -O2 -c eigen.f -o eigen.o g77 -g -O2 -c lminfl.f -o lminfl.o g77 -g -O2 -c blas.f -o blas.o ar cr libappl.a Rsock.o S_compat.o approx.o bakslv.o binning.o chisqsim.o chull.o cpoly.o cumsum.o distance.o fft.o fmin.o fortran.o lbfgsb.o loglin.o lowess.o machar.o maxcol.o massdist.o pretty.o rowsum.o sock.o splines.o stem.o strsignif.o tabulate....

....o gcc -ieee_with_inexact -g -I../include -I../../src/include -c eigen.c -o eigen.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c fortran.c -o fortran.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c fft.c -o fft.o f77 -g -fpe3 -c fmin.f -o fmin.o f77 -g -fpe3 -c lminfl.f -o lminfl.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c loglin.c -o loglin.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c lowess.c -o lowess.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c machar.c -o machar.o gcc -ieee_with_inexact -g -I.....