search for: lmes

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2004 May 13
3
GLMMs & LMEs: dispersion parameters, fixed variances, design matrices
Three related questions on LMEs and GLMMs in R: (1) Is there a way to fix the dispersion parameter (at 1) in either glmmPQL (MASS) or GLMM (lme4)? Note: lme does not let you fix any variances in advance (presumably because it wants to "profile out" an overall sigma^2 parameter) and glmmPQL repeatedly calls lme, so I...
2010 Aug 30
1
Help With Post-hoc Testing
...uot;,idvar="iobs",sep="", dir="long") > solution <- factor(solution,levels(1:17),) > stack[1:5,] iobs solution soi 32.1 32 1 7.00 70.1 70 1 5.95 78.1 78 1 3.00 104.1 104 1 3.75 117.1 117 1 5.00 > Lmes.mod <- lme(soi ~ solution + iobs, random = ~1 | iobs/solution, data = stack) > anova(Lmes.mod) numDF denDF F-value p-value (Intercept) 1 2383 2894.8342 <.0001 solution 1 2383 0.0003 0.9870 iobs 1 147 0.0126 0.9109 > summary(glht(Lme...
2010 Aug 05
3
eval-parse and lme in a loop
...=rnorm(9, mean=0.5, sd=0.7), c3=rnorm(9, mean=0.9, sd=1) ); ## this works means.lmeNoCovariate=lme(Mean_1 ~ Group, data=df, random = ~ 1 | Subject) print(summary(means.lmeNoCovariate)) print(anova(means.lmeNoCovariate)) for (meanCol in paste("Mean_", 1:3, sep="")) { ## LMEs go here cat("####################################################################################################\n") cat("### AOV\n") cat("####################################################################################################\n") ## this works...