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Hi, Can anyone advise me on how to compile R with Portland Group compiler on a Opeteron machine with Red Hat Enterprise Linux WS release 4 installed? I've edit config.site file to pick portland group compilers instead of gcc. Here is the list of modified flags: CC=/usr/pgi/linux86-64/6.0/bin/pgcc CFLAGS='-g -O2' CPPFLAGS='-I/usr/pgi/linux86-64/6.0/include -I/usr/pgi/linux86-64/6.0/include/CC' F77=/usr/pgi/linux86-64/6.0/bin/pgf77 FLAGS='-O2' CPICFLAGS=-fPIC FPICFLAGS=-fPIC SHLIB_LDFLAGS=-shared LDFLAGS='-L/usr/pgi/linux86-64/6.0/lib -L/usr/lib64&...

Hi all I have built a preliminary debian package for dev86, required to build xen with vmx support. you can get my packages here: http://debian.nsp.co.nz/dev86. I have also trivially patched the rules for xen 3 to build the vmxloader and include it in the resulting packages, my builds/sources for these packages are here: http://debian.nsp.co.nz/xen3/. I''m working with debian-mentors

...ying to compile R-devel (R-devel_2006-05-17.tar.gz) on Red Hat Enterprise Linux AS release 3 (Taroon Update 7) using the Portland Group compiler 6.0. (I have not yet successful compiled R on this configuration, so I don't know if this is a new problem.) I get an error pgcc -L/usr/local/pgi/linux86-64/6.0/libso -L/usr/lib64 -o dftables dftables.o ../dftables chartables.h ../dftables: error while loading shared libraries: libpgc.so: cannot open shared object file: No such file or directory make[3]: *** [chartables.h] Error 127 The library containing libpgc.so is in both my LD_LIBRARY_PATH...

...ages indicating C longs are 4 bytes. ******************************************* % configure --host=x86_64-unknown-linux-gnu . . . R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/local/R.pgcc C compiler: /usr/pgi/linux86-64/6.0/bin/pgcc -g -O2 -mieee-fp C++ compiler: /usr/pgi/linux86-64/6.0/bin/pgCC -g Fortran compiler: /usr/pgi/linux86-64/6.0/bin/pgf77 -O2 Interfaces supported: X11 External libraries: readline Additional capabilities: PNG, JPEG, MBCS, NLS Option...

...message, https://stat.ethz.ch/pipermail/r-devel/2004-February/028966.html, to convert static libraries to dynamic libraries. However, when I tried to configure R-devel, I got the following error messages in config.log: configure:33172: checking for sgemm_ in -lf77blas configure:33210: /usr/pgi/linux86-64/6.0/bin/pgcc -o conftest -g -O2 -mieee-fp -I/usr/pgi/linux86-64/6.0/include -I/usr/pgi/l\ inux86-64/6.0/include/CC -L/usr/pgi/linux86-64/6.0/libso -L/usr/lib64 -L/usr/local/lib64 conftest.c -lf77blas -latlas -lpgftn\ rtl -lnspgc -lpgc -lm -ldl -lm >&5 pgcc-Warning-Unknown switch: -mi...

...ols' make[2]: *** [R] Error 1 make[2]: Leaving directory `/home/andy/Rbuild/R221-pgi/src/library' make[1]: *** [R] Error 1 make[1]: Leaving directory `/home/andy/Rbuild/R221-pgi/src' make: *** [R] Error 1 I configured it as follows: ~/Rbuild/R-patched/configure \ PG_HOME=/usr/pgi/linux86-64/6.1 \ CC=pgcc \ CFLAGS="-O2 -Kieee" \ CPPFLAGS="-I$PG_HOME/include -I$PG_HOME/include/CC" \ CPICFLAGS=-fpic \ F77=pgf77 \ FFLAGS="-Kieee"\ FPICFLAGS=-fpic \ CXX=pgCC \ CXXFLAGS="-Kieee"\ CXXPICFLAGS=-fpic \...

...icular, the following: > pretty(pi, n = 10) - 2:5 [1] -2.220446e-16 -4.440892e-16 -8.881784e-16 -8.881784e-16 whereas the build with the -Kieee flag gives: > pretty(pi, n = 10) - 2:5 [1] 0 0 0 0 and can pass the arith-true.R test. The configuration is as follows: export PG_HOME=/usr/pgi/linux86-64/6.1 ~/Rbuild/R-patched/configure \ CC=pgcc \ CFLAGS="-g -Kieee" \ CPPFLAGS="-I$PG_HOME/include -I$PG_HOME/include/CC" \ CPICFLAGS=-fpic \ F77=pgf95 \ FFLAGS="-g -Kieee"\ FPICFLAGS=-fpic \ CXX=pgCC \ CXXFLAGS="-g -Ki...

This may be a tad O.T., but I have to ask somebody. In compiling WRF model, everything seems to build but at runtime, I get this error message: real.exe: /usr/pgi/linux86-64/6.0/lib/libpthread.so.0: version `GLIBC_2.3.3' not found (required by /lib64/tls/librt.so.1) There appears to be something missing from the library, but not being smart enough to know what each one provides, nor know how to look at it, I'd sure like some pointers if anyone cares to h...

...12 llc 0x0000000000f992bb llvm::PassManagerImpl::run(llvm::Module&) + 171 13 llc 0x000000000052feb2 main + 5778 14 libc.so.6 0x00007f5dd62fdc4d __libc_start_main + 253 15 llc 0x000000000052bc29 Stack dump: 0. Program arguments: /home/deldon/Work/dev/pgi/linux86/share/llvm/3.2/bin/llc localvar2.ll -march=x86 -o localvar2.s 1. Running pass 'Function Pass Manager' on module 'localvar2.ll'. 2. Running pass 'X86 AT&T-Style Assembly Printer' on function '@foo' To me debug metadata, I'm generating, seem correct, but I c...

...lling it. I have set the $R_LIBS variable correctly. The MPI libraries are available through the PGI compiler, but this R instance was compiled with GCC. The Rmpi package can be compiled and installed with %R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args="CC=pgcc --with-mpi=/shared/pgi725/linux86-64/7.2/mpi/mpich" But when entering R and loading the library, I get %R > library(Rmpi) Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/<username>/.Rlib/Rmpi/libs/Rmpi.so': /home/<username>/.Rlib/Rmpi/libs/Rmpi.so: undefined sy...

Hi everyone, Just wanted to let everyone know that the TransGaming DirectX development is now being hosted at SourceForge. You can get updates from our live CVS tree, discuss DirectX specific issues on the 'WineX-devel' mailing list, etc. The SourceForge project page is at: http://sourceforge.net/project/winex The CVSROOT for CVS is:

...ially what is happening is the primary executable I'm trying to run is failing under mpi. Here's the output from the command (which would be the same as the script calling it) $ /usr/local/mpich/bin/mpirun -machinefile machines.LINUX -np 2 ./wrf.exe /home/sam/WRFV2/run/./wrf.exe: /usr/pgi/linux86-64/6.0/lib/libpthread.so.0: version `GLIBC_2.3.3' not found (required by /lib64/tls/librt.so.1) Oddly enough, this same kernel environment works quite well with a previous version of the WRF code, but fails miserably with this update.. The compiler which bullt the old package built the new on...

...FSv4 share. LD_LIBRARY_PATH included a directory on this share. gdb backtrace revealed that the process was being loaded in memory, and an attempt to open (non-existing) library file never completed. /Pawel strace -p 19289 Process 19289 attached - interrupt to quit open("/pkg/pgi/5.2-4//linux86/5.2/lib/libg2c.so.0", O_RDONLY <unfinished ...> gdb program.x 19289 0x0063cb04 in open () from /lib/ld-linux.so.2 (gdb) where 0 0x0063cb04 in open () from /lib/ld-linux.so.2 1 0x0062d6c5 in open_verify () from /lib/ld-linux.so.2 2 0x0062dc6a in open_path () from /lib/ld-linux.so.2...

...0f992bb llvm::PassManagerImpl::run(llvm::Module&) + 171 > 13 llc 0x000000000052feb2 main + 5778 > 14 libc.so.6 0x00007f5dd62fdc4d __libc_start_main + 253 > 15 llc 0x000000000052bc29 > Stack dump: > 0. Program arguments: /home/deldon/Work/dev/pgi/linux86/share/llvm/3.2/bin/llc localvar2.ll -march=x86 -o localvar2.s > 1. Running pass 'Function Pass Manager' on module 'localvar2.ll'. > 2. Running pass 'X86 AT&T-Style Assembly Printer' on function '@foo' > > > To me debug metadata, I'm g...

...from Jennifer Lai on p33 of "R Installation and Administration" version 2.3.0 (2006-04-24). I have not used this compiler before, so it is possible things are messed up more than usual, even for me. Following the R Installation and Administration notes I set export PGI=/usr/pgi/linux86-64/6.1 export PATH=$PGI/bin:$PATH export MANPATH=$MANPATH=$PGI/man:/ export CC=pgcc export CFLAGS="-g -O2 -Kieee" export CPPFLAGS="-I$PGI/include -I$PGI/include/CC" export F77=pgf77 export FFLAGS="-g -O2 -Kieee" export CX...