search for: libpath

...m sure I am missing something really basic, but I can't figure it out. I want to start R so that I can specify the location for the Library tree. In principel simple: As I only want it dependent on the directory I stat R in, I put a .Rprofile file in the directory. My default path is: > .libPaths() [1] "/home/rkrug/R/i686-pc-linux-gnu-library/2.15" [2] "/usr/lib/R/site-library" [3] "/usr/lib/R/library" > But I want to have it > .libPaths() [1] "/home/rkrug/THE_DIRECTORY/library" [2] "/usr/lib/R/library" > The first part is eas...

...nce then so this is to update anyone interested (!) and to ask for comments. Brief problem statement: Under Windows, some parts of R don't handle UNC paths beginning with backslashes. Specifically a) Sys.glob() fails to find some files breaking (e.g.) Rcmdr plugins Sys.glob(file.path(.libPaths(), "*/etc/menus.txt")) fails to find files which are there b) update.packages(ask='graphics') fails when copying the updates into the destination folders In Renviron.site I define the site library with forward slashes, not backslashes thus... R_LIBS_SITE=//campden/share...

Hi, TL;DR ----- I define the path /cm/shared/apps/R/site-library/3.4.2 and add it to libPath. Why does libPath then display it as /cm/shared/apps/R/site-library/3.4 ? Long version ------------ I run a cluster of diskless nodes for which the OS is loaded directly into RAM and other software is provided by an NFS server. However, in the case of R, we use the R version provided by...

I used to have the following in my .Rprofile: if (length(.libPaths())==1) .libPaths(paste(Sys.getenv("HOME"),"/Library/R/",paste(R.version$major,as.integer(R.version$minor),sep='.'),"/library",sep='')) -- and it added my user-defined library directory. Then I installed packages there, so during an upgrade, I'd k...

Hello I use the function .libPaths() > .libPaths() [1] "/usr/local/lib/R/library" > .libPaths(c("/usr/local/lib/myRlib","/usr/local/lib/library")) > .libPaths() [1] "/usr/local/lib/R/library" but it simply does not pick up the new path. Can anybody help? (The problem originates fr...

High, on all of my computers the first entry in libPaths for root was /usr/lib64/R/library or /usr/lib/R/library. Now it change at one (lynx) anyway to root at lynx:/root(2)# R R version 2.12.1 (2010-12-16) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and c...

Hallo R experts, I got a question concerning the .libPaths(). if I do the command .libPaths() than the result is /usr/lib/R/library. This is the default folder. I now want to change this one into /home/csc/usr/lib/R/library. I thought it would work with the command .libPaths("/home/csc/usr/lib/R/library"). When I than do the command .libPaths()...

...HOSTLD scripts/kconfig/qconf /usr/bin/ld: cannot find -lqt collect2: ld returned 1 exit status make[1]: *** [scripts/kconfig/qconf] Error 1 make: *** [xconfig] Error 2 and the fixes suggest removing the middle two lines in scripts/kconfig/Makefile (starting at line 130 for the 2.6.11.12 case): LIBPATH=$$DIR/lib; LIB=qt; \ - $(HOSTCXX) -print-multi-os-directory > /dev/null 2>&1 && \ - LIBPATH=$$DIR/lib/$$($(HOSTCXX) -print-multi-os-directory); \ if [ -f $$LIBPATH/libqt-mt.so ]; then LIB=qt-mt; fi; \ But that still returns the same fault. Can anyone advise? The same kernel...

> On Nov 23, 2017, at 4:34 AM, Loris Bennett <loris.bennett at fu-berlin.de> wrote: > > Hi, > > TL;DR > ----- > > I define the path > > /cm/shared/apps/R/site-library/3.4.2 > > and add it to libPath. Why does libPath then display it as > > /cm/shared/apps/R/site-library/3.4 Generally one only has a different library for each major version of R. Major versions are consider just the first two numbers in the dot-separated versions system. Apparently libPaths is "smart" enoug...

Hello, I'm having some trouble trying to set the .libPaths() on Windows 7, R-2.15.0 and R-2.15.1. The environment variables R_LIBS and R_LIBS_USER are set according to the help page for .libPaths() and the Rprofile.site file has the default setting, as shown below. R-2.14.1 recognizes the lib paths but not R-2.15. Is this a bug or am I doing something...

Good day, I believe from the documentation that folders in R_LIBS should appear in the output of .libPaths, but they do not. The documentation contains "The library search path is initialized at startup from the environment variable R_LIBS ..." However, $ export R_LIBS=/users/stgrad/dario/tmp/ $ Rscript -e ".libPaths()" [1] "/dskh/nobackup/biostat/Bioconductor" "/us...

Hello, Man page for 'install.packages' says that if the 'lib' arg is missing, then it "defaults to '.libPaths()[1]' with a warning". But, given the 'install.packages' source code, it seems that this warning is issued only when 'length(.libPaths()) > 1'. So typically, this warning will appear on Mac OS X but not on a Linux or Windows systems with default settings. On my Mac OS X...

In R v2.12.2 patched (2011-03-13 r54787) and also in R v2.13.0 devel (2011-03-15 r54806), .libPaths() may return the multiple paths referring to the same "normalized" path name. Here is an example from Rterm --vanilla using R v2.12.2 patched: > paths <- .libPaths(c("C:/", "C:\\")) > paths [1] "C:/" [2] "C:\\" [3] "C:/PROGRA~1/R/R-...

...gt;> Hi R-devel, >> >> One of the more common issues that new R users see, and become stumped >> by, is error messages during package load of the form: >> >> > library(ggplot2) >> Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), >> versionCheck = vI[[j]]) : >> there is no package called 'Rcpp' >> Error: package or namespace load failed for 'ggplot2' >> >> Typically, error messages of this form are caused simply by one or >> more dependent pac...

I want my local libraries to have priority over the system installed ones, which, as far as I can make out from help(".libPaths"), means they have to come first in that list (it doesn't actually_say_ so, but that seems to be the idea). We have R_LIBS_USER which looks made for specifying where I keep my own libraries. Unfortunately it comes last in .libPaths() [which appears to me to be a bug (1) if that mean...

> On Nov 23, 2017, at 4:34 AM, Loris Bennett <loris.bennett at fu-berlin.de> wrote: > > Hi, > > TL;DR > ----- > > I define the path > > /cm/shared/apps/R/site-library/3.4.2 > > and add it to libPath. Why does libPath then display it as > > /cm/shared/apps/R/site-library/3.4 > > ? > Because it is a symbolic link. ?.libPaths says "For consistency, the paths are always normalized by normalizePath(winslash = "/")." and ?normalizePath says "...th...

Good day, If the library path is changed with .libPaths, the command install.packages("/nb/dario/Biostrings_2.39.9.tar.gz", repos=NULL) fails with ** testing if installed package can be loaded Error : package ?S4Vectors? required by ?Biostrings? could not be found However, running library(S4Vectors) followed by sessionInfo() after the er...

...namespace Speex { ///<summary> ///the following class is the win32 SPEEX API that retrieve ///methods and structures from the libspeex file ///</summary> public unsafe class Speex_win32 { #region Speex Constants //global speex file that contains the api(s) public const string libpath = "libspeex.dll"; public const int Frame_Size = 160; public const int Max_Frame_Size = 2000; public const int Speex_Get_Frame_Size = 3; public const int Speex_Set_Quality = 4; public const int Speex_nb_Mode = 3; //create the structure that will hold the speexbits public struct Spee...

...08/2008-April/160963.html where Prof Ripley opines "The issue appears to be that your OS is garbling file names", and it surely does seem to be a filename problem - in combination R and Windows don't seem to be handling the '//server/share' path construction. I have: > .libPaths() [1] "//Server02/stats/R/library/2.10" "//Server02/stats/R/R-Current/library" I can work around by mapping a drive letter to the '//server/share', but prefer not to (for local reasons). In CHANGES.R-2.10.1pat I find CHANGES IN R VERSION 2.7.2 patched o dir.cr...

Works for me. Which shell are you using? Are you setting .libPaths elsewhere? Peter-Dalgaards-MacBook-Air:F pd$ R_LIBS=~/tmp Rscript -e '.libPaths()' [1] "/Users/pd/tmp" [2] "/Library/Frameworks/R.framework/Versions/3.2/Resources/library" Peter-Dalgaards-MacBook-Air:F pd$ export R_LIBS...