search for: libnn

Hum, missed that bit. Looking at the configure script, the only way I can see it failing to look in /usr/lib/tcl8.6 is if ${LIBnn} is not "lib". Any chance it might be set to lib64? -pd > On 18 Nov 2017, at 22:32 , Rolf Turner <r.turner at auckland.ac.nz> wrote: > > > On 19/11/17 05:36, Albrecht Kauffmann wrote: > >> Did you istall the tcl- and tk-devel packages? > > (a) That...

...source) Beginning of /usr/lib64/R/bin/R R_HOME_DIR=/usr/lib64/R if test "${R_HOME_DIR}" = "/usr/lib64/R"; then case "linux-gnu" in linux*) run_arch=`uname -m` case "$run_arch" in x86_64|mips64|ppc64|powerpc64|sparc64|s390x) libnn=lib64 libnn_fallback=lib ;; *) libnn=lib libnn_fallback=lib64 ;; esac if [ -x "/usr/${libnn}/R/bin/exec/R" ]; then R_HOME_DIR=/usr/lib64/R elif [ -x "/usr/${libnn_fallback}/R/bin/exec/R" ]; then...

...Something got changed by the "install r-base" procedure, and there would appear to be no way of tracking down just what got changed. It's things like that which make me want to "do it myself" as much as possible. W.r.t. Peter Dalgaard's suggestion/question about ${LIBnn}$: I looked through R-3.4.2/configure and can see nowhere that LIBnn gets set. (Lots of references to LIBnn, but nowhere that its value gets set equal to something.) BTW I (of course) am using the configure file that comes with R-3.4.2; I haven't changed anything. So if anyone looks at t...

...something like this: ---- if test -z "${R_HOME_DIR}"; then R_HOME_DIR=$(dirname $(readlink -f "$0"))/../lib/R fi case "linux-gnu" in linux*) run_arch=`uname -m` case "$run_arch" in x86_64|mips64|ppc64|powerpc64|sparc64|s390x) libnn=lib64 libnn_fallback=lib ;; *) libnn=lib libnn_fallback=lib64 ;; esac if [ -x "${R_HOME_DIR}/../../${libnn}/R/bin/exec/R" ]; then R_HOME_DIR="${R_HOME_DIR}/../../${libnn}/R" elif [ -x "${R_HOME_DIR}/../../$...

Rolf, looking at the configure script I believe you need to specify --with-tcl-config=/usr/lib/tcl8.6/tclConfig.sh and similarly --with-tk-config=<location of tkConfig.sh> HTH, Peter On Fri, Nov 17, 2017 at 8:43 PM, Rolf Turner <r.turner at auckland.ac.nz> wrote: > On 18/11/17 17:00, Erin Hodgess wrote: >> >> When I have compiled from sourced on Ubuntu, I did NOT

On 18/11/17 17:00, Erin Hodgess wrote: > When I have compiled from sourced on Ubuntu, I did NOT include the > "with-tcltk" and it worked fine.? Did you try that, please? In the past I have configured without using the "--with-tcltk" flag, and R of course built just fine. But it *did not* have tcltk capability. When I wanted that capability I had to start using the

....181.94.250) Compile R for 32 bit on a 64 bit machine: unset LD_LIBRARY_PATH unset R_LD_LIBRARY_PATH export CC="gcc -m32" export CXXFLAGS="-m32 -O2 -g" export FFLAGS="-m32 -O2 -g" export FCFLAGS="-m32 -O2 -g" export OBJCFLAGS="-m32 -O2 -g" export LIBnn=lib ./configure --with-x=no --enable-R-shlib --prefix=/prefix Now try to install a package which has Fortran files inside: /prefix/bin/R CMD INSTALL crawl_1.0-4.tar.gz * Installing to library '/prefix/lib/R/library' * Installing *source* package 'crawl' ... ** libs gfortran -fp...

...into an issue I'm not sure how to isolate. After updating to the latest SVN sources, and using: ---<--------------------cut here---------------start------------------->--- tools/rsync-recommended R_PAPERSIZE=letter \ R_BATCHSAVE="--no-save --no-restore" \ R_BROWSER=xdg-open \ LIBnn=lib \ ./configure \ --enable-R-shlib \ --enable-strict-barrier \ --with-blas \ --with-lapack \ --with-readline \ --with-tcl-config=/usr/lib/tcl8.6/tclConfig.sh \ --with-tk-config=/usr/lib/tk8.6/tkConfig.sh make ---<--------------------cut here---------------end-------...

...\ > # PAGER=/usr/bin/pager \ > # PERL=/usr/bin/perl \ > # R_UNZIPCMD=/usr/bin/unzip \ > # R_ZIPCMD=/usr/bin/zip \ > # R_PRINTCMD=/usr/bin/lpr \ > # LIBnn=lib \ > # AWK=/usr/bin/awk \ > # CC="ccache gcc" \ > # CFLAGS="-ggdb -pipe -std=gnu99 -Wall -pedantic -DTESTING_WRITE_BARRIER" \ > # CXX="ccache g++"...

...e response is -L/usr/local/lib64/R/lib -lRblas. This tells me that R is not linked to the Intel BLAS at all. My config.site file for R is: #! /bin/sh R_PAPERSIZE=letter CFLAGS="-g -O2 -p -pg" CPPFLAGS="-I/opt/intel/mkl/10.0.1.014/include -I/usr/include -I/usr/local/include" LIBnn=lib64 BLAS_LIBS="-L/opt/intel/mkl/10.0.1.014/lib/em64t -Wl,--start-group -lmkl_gf_lp64.so -lmkl_gnu_thread.so -lmkl_core.so -l -l -l -Wl, --end-group -lguide -lpthread -lm" I have set the CONFIG_SITE environment variable to the location of the config.site.file. I am doing everything a...

...can differ for an S4 object by calling show() rather than print()). o filled.contour() now accepts infinite values: previously it might have generated invalid graphics files (e.g. containing NaN values). INSTALLATION: o On 64-bit Linux systems, configure now only sets LIBnn to lib64 if /usr/lib64 exists. This may obviate setting LIBnn explicitly on Debian-derived systems. It is still necessary to set LIBnn = lib (or lib32) for 32-bit builds of R on a 64-bit OS on those Linux distributions capable for supporting that concept. o conf...

...can differ for an S4 object by calling show() rather than print()). o filled.contour() now accepts infinite values: previously it might have generated invalid graphics files (e.g. containing NaN values). INSTALLATION: o On 64-bit Linux systems, configure now only sets LIBnn to lib64 if /usr/lib64 exists. This may obviate setting LIBnn explicitly on Debian-derived systems. It is still necessary to set LIBnn = lib (or lib32) for 32-bit builds of R on a 64-bit OS on those Linux distributions capable for supporting that concept. o conf...

...updating to the >> latest SVN sources, and using: >> >> ---<--------------------cut >> here---------------start------------------->--- >> tools/rsync-recommended R_PAPERSIZE=letter \ R_BATCHSAVE="--no-save >> --no-restore" \ R_BROWSER=xdg-open \ LIBnn=lib \ ./configure \ >> --enable-R-shlib \ --enable-strict-barrier \ > I don't set that but it shouldn't bite ... I removed the --enable-strict-barrier and kept everything else the same and compilation went fine. I can't remember what this strict barrier does, but it's st...

...ard to modify configure to also check /usr/lib, but we probably shouldn't do it if one user has shot himself in the foot somehow. -pd > On 19 Nov 2017, at 02:02 , Rolf Turner <r.turner at auckland.ac.nz> wrote: > > Then I scanned through BldDir/config.log and found: > > LIBnn='lib64' > > (on line 19901 !!!) > > So it would appear that Peter D.'s conjecture is correct. > > OTOH this is waaayyy after the "checking for tclConfig.sh" business, which happens at about line 15101 of config.log. So how does it have an impact on that?...

...sysconfdir=/etc/R-devel \ > --datarootdir=/opt/r-devel/share \ > rsharedir=/opt/r-devel/share/R/ \ > rincludedir=/opt/r-devel/include/R/ \ > rdocdir=/opt/r-devel/share/doc/R/ \ > --with-x \ > --enable-R-shlib \ > --with-lapack \ > --with-blas \ > F77=gfortran \ > LIBnn=lib Thanks and cheers, Philipp Helmholtz Zentrum Muenchen Deutsches Forschungszentrum fuer Gesundheit und Umwelt (GmbH) Ingolstaedter Landstr. 1 85764 Neuherberg www.helmholtz-muenchen.de Aufsichtsratsvorsitzende: MinDir'in Baerbel Brumme-Bothe Geschaeftsfuehrer: Prof. Dr. Guenther Wess, H...

...we have [1] edd at ron:~> R CMD config --cppflags -I/usr/share/R/include edd at ron:~> but I seem to have no way to learn 'just' the /usr/share/R/include part from R CMD config. It would be nice if something like R CMD config R_INCL_DIR could be added as we do have 'LIBnn'. Obviously, this is nothing we need now before 2.8.0. But if it could get added to R-devel, I'd appreciate it. [ The context is that 'R CMD INSTALL' does fewer things than a few of us desired (as per a thread a few months ago) but seemingly nobody with the magic powers to chang...

...guest = - (* The VDDK path. *) - let libdir = - try Some (List.assoc "libdir" vddk_options) - with Not_found -> None in - - (* VDDK libraries are located under lib32/ or lib64/ relative to the - * libdir. Note this is unrelated to Linux multilib or multiarch. - *) - let libNN = sprintf "lib%d" Sys.word_size in - - (* Compute the LD_LIBRARY_PATH that we may have to pass to nbdkit. *) - let library_path = Option.map (fun libdir -> libdir // libNN) libdir in - - (* Check that the VDDK path looks reasonable. *) - let error_unless_vddk_libdir () = - (matc...

...ot; CFLAGS="-xO5 -xlibmil -dalign" F77="f95 -xarch=v9" FFLAGS="-xO5 -xlibmil -dalign" CXX="CC -xarch=v9" CXXFLAGS="-xO5 -xlibmil -dalign" FC="f95 -xarch=v9" FCFLAGS="-xO5 -xlibmil -dalign" LIBnn="lib" ./configure --prefix=/where/R/installed--enable-R-shlib --with-x --with-readline=no it throws below error message cc -xarch=v9 -I/R/src/R-2.8.1/include -I/myiconv/include -I/mypng/SunOS/include -I/myjpeg/SunOS/include -I/myzlib/SunOS/include -Wno-long-long -KPIC...

...filing' '--enable-R-shlib' '--enable-memory-profiling' '--without-recommended-packages' '--build' 'x86_64-linux-gnu' 'build_alias=x86_64-linux-gnu' 'R_PRINTCMD=/usr/bin/lpr' 'R_PAPERSIZE=letter' 'R_BROWSER=xdg-open' 'LIBnn=lib' 'JAVA_HOME=/usr/lib/jvm/default-java' 'CC=gcc -std=gnu99' 'CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g' 'LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro' 'CPPFLAGS=' 'F77=gfortran...

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving