search for: liblapack3gf

...blas /usr/bin/ld: cannot find -latlas ---------BUT [ 48 ] <wow> (ron) /usr/bin/R CMD config LAPACK_LIBS -llapack ---------AND <wow> (ron) dpkg -l | grep lapack ii liblapack-dev 3.2.1-8 library of linear algebra routines 3 - static version ii liblapack3gf 3.2.1-8 library of linear algebra routines 3 - shared version [ 44 ] <wow> (ron) Based on Dirk's suggestion: "I think you were pretty close by looking at lapack-dev and blas-dev, but you missed atlas-dev. Simply do $ sudo apt-get install r-base-d...

I installed R in (what I believe is) the standard way by adding the following line to /etc/apt/sources.list deb http://cran.us.r-project.org/bin/linux/ubuntu precise/ All was well, until I recently upgraded from 2.15.1 to 2.15.2 by running sudo apt-get update sudo apt-get upgrade Now, when I try to do simple things, I get an error. e.g. R> PP.test(rnorm(1000)) Error in

.../usr/local/lib/R/site-library/lme4 ---------BUT [ 48 ] <wow> (ron) /usr/bin/R CMD config LAPACK_LIBS -llapack ---------AND <wow> (ron) dpkg -l | grep lapack ii liblapack-dev 3.2.1-8 library of linear algebra routines 3 - static version ii liblapack3gf 3.2.1-8 library of linear algebra routines 3 - shared version [ 44 ] <wow> (ron) --------I did see a message indicating "Also do 'ldd /usr/lib/R/bin/exec/R' and make sure you do _not_ have a depends on Rlapack.so. ....": [ 47...

...2-1 Runtime library for GNU Fortran ap | ii libglib2.0-0 2.16.6-1 The GLib library of C routines | ii libice6 2:1.0.4-1 X11 Inter-Client Exchange library | ii libjpeg62 6b-14 The Independent JPEG Group's JPEG | ii liblapack3gf [liblapac 3.1.1-6 library of linear algebra routines | ii libpango1.0-0 1.20.5-3 Layout and rendering of internatio | ii libpaper-utils 1.1.23+nmu1 library for handling paper charact | ii libpcre3 7.8-2 Perl 5 Compatible Regular...

...use these libraries so it not an lme4 package problem. ---------BUT [ 48 ] <wow> (ron) /usr/bin/R CMD config LAPACK_LIBS -llapack ---------AND <wow> (ron) dpkg -l | grep lapack ii liblapack-dev 3.2.1-8 library of linear algebra routines 3 - static version ii liblapack3gf 3.2.1-8 library of linear algebra routines 3 - shared version [ 44 ] <wow> (ron) --------I did see a message indicating "Also do 'ldd /usr/lib/R/bin/exec/R' and make sure you do _not_ have a depends on Rlapack.so. ....": [ 47 ] <wow> (ron)...

...inux-x86-64.so.2 (0x00007f91581c0000) libncurses.so.5 => /lib/libncurses.so.5 (0x00007f9155f46000) --- Also if I have the LAPACK and ATLAS libraries installed: busta at temisto:~$ dpkg -l | grep lapack ii lapack3 3.0.20000531a-6.1ubuntu1 ii liblapack-dev 3.1.1-0.3ubuntu2 ii liblapack3gf 3.1.1-0.3ubuntu2 busta at temisto:~$ dpkg -l | grep atlas ii atlas3-base 3.6.0-20.6 ii libatlas-base-dev 3.6.0-21.1ubuntu3 ii libatlas-headers 3.6.0-...

Hi, Since upgrading to version 2.11.0~20100402-1, starting R fails with: /usr/lib64/R/bin/exec/R: error while loading shared libraries: libblas.so.3gf: cannot open shared object file: No such file or directory Is this occurring to others on sid? -- Seb

...ar/spool/atlas39/libatlas39_3.9.25-1_amd64.deb Package: libatlas39 Source: atlas39 Version: 3.9.25-1 Architecture: amd64 Maintainer: Dirk Eddelbuettel <edd at debian.org> Installed-Size: 22656 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3) Suggests: libblas3gf, liblapack3gf Provides: libatlas.so.3gf, libblas.so.3gf, liblapack.so.3gf Section: libs Priority: optional Homepage: http://math-atlas.sourceforge.net/ Description: Automatically Tuned Linear Algebra Software, version 3.9.25 ATLAS is an approach for the automatic generation and optimization of numerical softwa...

Dear all, I am estimating a mixed-model in Ubuntu Raring (13.04¸ amd64), with the code: fm0 <- lme(rt ~ run + group * stim * cond, random=list( subj=pdSymm(~ 1 + run), subj=pdSymm(~ 0 + stim)), data=mydat1) When I check the approximate variance-covariance matrix, I get: > fm0$apVar [1] "Non-positive definite

...s.gz: > > > mm <- matrix(rnorm(10^6), ncol = 10^3) > > system.time(crossprod(mm)) > [1] 2.38 0.04 2.84 0.00 0.00 > > (but these days use a bigger size than 10^6 and 10^3) > > Then uninstall all your libatlas packages and make do with refblas3 and > liblapack3gf. Rerun the matrix multiplation. Note the time. > > Now install a libatlas* for you architecture, or just libatlas3gf-base and > re-run the same matrix multiplication. You will see a speed up. > > And you didn't have to recompile R. > > All this brought to you by the w...

...sation/ModelTrainer.h:43: error: `eps' was not declared in this scope optimisation/ModelTrainer.h:47: error: `itpp' is not a namespace-name .. .. .. make: *** [astonGeostats.o] Error 1 ERROR: compilation failed for package ?psgp? solved: apt-get install libblas-dev libblas3gf liblapack-dev liblapack3gf libfftw3-3 libfftw3-dev apt-get install libitpp-dev libitpp6gf ================================================================================================ gcc34 script: #/bin/sh mkdir DELEME && cd DELEME && wget http://ge.archive.ubuntu.com/ubuntu/pool/universe/g/gcc-3.4/lib...