search for: libgsl

...upgraded to the latest R (3.3.2) and thought I should update my library of contributed packages. Ran into problems with "copula". Got the error: > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object '/home/rolf/Rlib/gsl/libs/gsl.so': > libgsl.so.0: cannot open shared object file: No such file or directory So after a bit of googling around I did: sudo apt-get install libgsl2 sudo apt-get install libgsl-dev both of which ran successfully. Still no joy, but. What *else* do I need to do? I am running Ubuntu 16.04.1. cheers,...

...;> update my library of contributed packages. >> >> Ran into problems with "copula". Got the error: >> >>> Error in dyn.load(file, DLLpath = DLLpath, ...) : >>> unable to load shared object '/home/rolf/Rlib/gsl/libs/gsl.so': >>> libgsl.so.0: cannot open shared object file: No such file or directory >> >> So after a bit of googling around I did: >> >> sudo apt-get install libgsl2 >> sudo apt-get install libgsl-dev >> >> both of which ran successfully. >> >> Still no joy...

...or message mentions (perhaps not very clearly) that the shared library installed with the gsl R package could not be loaded. Chances are that the gsl package (and as a consequence the copula package, too) didn't work before you upgraded. This can happen e.g. if the dependent system library (libgsl-dev?) is upgraded. update.packages() doesn't try to load any packages, which would be necessary to detect this scenario. -Kirill On 01.11.2016 09:45, Rolf Turner wrote: > On 01/11/16 21:08, Kirill M?ller wrote: >> Did you reinstall the gsl package [1]? > > Apparently not....

Dear all, I'm new to R and am trying to create a dll in order to be able to use the "dyn.load". I work with some examples and its works fine. Now, I would like to create a dll that use a lib (libgsl.a). I have linked its in a main c program and its works fine too. How can I instruct rcm ... to include this lib??? The .h file is in mingw\include\gsl and I put #include <gsl/gsl_cdf.h> in the C code. The libgsl.a is in mingw\lib. Best regards.

Following the recommendation of Prof. Ripley, I have created the Makevars file with the line: PKG_LIBS="-L/usr/lib/libm -lm -L/usr/local/lib/libgsl -lgsl -L/usr/local/lib /libgslcblas -lgslcblas" in the working directory. Now I have the code file Example3.c which computes the Bessel function value (the example is taken from the GSL reference book). I am running: R CMD SHLIB Example3.c and all looks good. The dyn.load("Example3.so&quo...

....path(libPath, "hello.so")) I got an error message in R Error in dyn.load(file.path(libPath, "hello.so")) : unable to load shared library '~/ccode/hello.so': ~/ccode/hello.so: undefined symbol: gsl_stats_mean I do have gsl installed and the gls lib folder has both libgsl.a and libgsl.so. How I can link the C code with gsl library from R CMD SHLIB? Any suggestions would be appreciated. Jeff

Dear R-list people, I asked a similar question a few hours before. I will try to be more specific. We like to add the GSL library to the file SHLIB in order to make it possible to run the C code using GSL functions from R. We read that the path to the libgsl.a should be added to the line shlib_libadd=' ' in the file SHLIB but it does not work on our system. Dyn.load fails with error "referenced symbol <symbolname> not found". What is wrong? We will much appreciate any help on this. We are using R-1.9.1 on Unix. [[alter...

...eceived the following warning message: "In file.create(f.tg) : cannot create file 'C:\PROGRA~2\R\R-28~1.1/doc/html/packages.html', reason 'Permission denied'" and when I load the package, an error message pops up saying that "the application failed to start because libgsl.dll was not found. Re-installing the application may fix the problem" Can anyone help to solve this problem. Mohammad [[alternative HTML version deleted]]

I hope that someone on this list can help me with this issue. I have searched through all of the documentation and mail archives for a solution, but have been unable to find an answer that addresses my particular problem directly. Suppose I am writing some C code that I want to access from R through the .C function. As part of the C function, I want to include an external C library, such as the

...Makefile make[2]: Entering directory `/home/rahman/Downloads/qtiplot-0.9.8.9/fitPlugins/explin' rm -f libexplin.so.1.0.0 libexplin.so libexplin.so.1 libexplin.so.1.0 g++ -Wl,-O1 -Wl,-z,relro -shared -Wl,-soname,libexplin.so.1 -o libexplin.so.1.0.0 explin.o -L/usr/lib64 ../../3rdparty/gsl/lib/libgsl.a ../../3rdparty/gsl/lib/libgslcblas.a -L/opt/local/lib -lpthread -lQtGui -lQtCore g++: error: ../../3rdparty/gsl/lib/libgsl.a: No such file or directory g++: error: ../../3rdparty/gsl/lib/libgslcblas.a: No such file or directory make[2]: *** [../libexplin.so.1.0.0] Error 1 make[2]: Leaving directo...

...n with the C header directives in extern{}. gsl is a library written in C, so I put the gsl's header directives also inside extern{}. I placed in my compiling directory a Makevars file with this content: PKG_LIBS = -lm -lgsl -lgslcblas and my R code looks like: dyn.load('/usr/local/lib/libgslcblas.so',F,) dyn.load('/usr/local/lib/libgsl.so',F,) dyn.load('/home/f/p/integral.so') Any hint? -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", &q...

...ibs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/lib64/R/library/gsl/libs/gsl.so': libgsl.so.0: cannot open shared object file: No such file or directory ERROR: loading failed * removing ?/usr/lib64/R/library/gsl? > sessionInfo() R version 2.12.0 (2010-10-15) Platform: x86_64-unknown-linux-gnu (64-bit)

...** help *** installing help indices ** building package indices ** installing vignettes ‘gslpaper.Rnw’ ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/data1/zhucai/local/R-2.15.1/library/gsl/libs/gsl.so': libgsl.so.0: cannot open shared object file: No such file or directory Error: loading failed Execution halted ERROR: loading failed * removing ‘/data1/zhucai/local/R-2.15.1/library/gsl’ I know it may be because LB_LIBRARY_PATH, but I cannot contract with administer easily and no right to modify it, so ho...

...m list on both and then diff the results. That''ll tell you > what''s different. Thanks for replying, I''ve finally gotten to the bottom of it. I''ve been using classifier (http://rubyforge.org/projects/classifier/) for some bayesian experiments, which requires libgsl. Seems that while rb-gsl (http://rb-gsl.rubyforge.org/) is installed, my models break! I''ve yet to work out why, but I also found that adding a stub to my model temporarily fixed the problem: def equal?( obj ) end Maybe someone else will find this helpful, thanks again :) - Paul

I have written an R package which contains C source code (in the directory pkg/src). Only a subset of the functions in the pkg/R directory contain a .C() call to the functions in the pkg/src directory. The rest of the package will still work and be useful without the functions containing a .C() call. To compile the code in pkg/src requires the GSL library. This is detailed in the

I am trying to install the gls package (a wrapper for GNU scientific library special functions) package under Ubuntu 5.10. I have gls-bin (the debian GNU Scientific Library binary package). When I try to install the R package, I receive the following. > install.packages("gsl",dependencies=T) Warning in install.packages("gsl", dependencies = T) : argument

Hi all, I've been working on improving R's optim() command, which does general purpose unconstrained optimization. Obviously, this is important for many statistics computations, such as maximum likelihood, method of moments, etc. I have focused my efforts of the BFGS method, mainly because it best matches my current projects. Here's a quick summary of what I've done: *

...ibs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/lib64/R/library/gsl/libs/gsl.so': libgsl.so.0: cannot open shared object file: No such file or directory ERROR: loading failed * removing ?/usr/lib64/R/library/gsl? > sessionInfo() R version 2.12.0 (2010-10-15) Platform: x86_64-unknown-linux-gnu (64-bit) ------------------------------ Message: 94 Date: Fri, 29 Oct 2010 22:41:03 -0...