search for: libbla

Displaying 20 results from an estimated 367 matches for "libbla".

Did you mean: libblas
2013 Dec 28
1
make check fails with default libblas
Dear All, Summary: ======== To test some packages, I want to build R-3.1.0 (current R devel). However, when I use the default libblas, make check fails with running code in 'reg-BLAS.R' ...make[3]: *** [reg-BLAS.Rout] Error 1 It does not fail, however, if I use libatlas3 or libopenblas. The same thing happens with the current R patched. I've google around and cannot find anything, and I find it very surprising...
2020 Oct 08
3
Installing package fails at "testing if installed package can be loaded from temporary location"
...06:45 0:00 grep exec/R user at user:~$ lsof -p 13836 | grep 'blas\|lapack' R 13836 user mem REG 8,1 33562376 3961750 /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 R 13836 user mem REG 8,1 27200552 3961749 /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 user at user:~$ ls -l /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 -rw-r--r-- 1 root root 27200552 Jun 2 06:55 /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 user at user:~$ ls -l /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 -rw-r--r-- 1 root root 33562376 Ju...
2011 Nov 03
4
How to used MKL (not revolution-mkl) with Debian packages
Hi folks, if you want to use MKL (the fast BLAS I have tested on my Thinkpad T410) with the R 2.14.0 built as Debian/Ubuntu packages available on CRAN mirror, the following tricks may works for without some known side-effects (likes openmp breaking issues), you may try to build your own libblas.so.3gf.0 with following command: $ gfortran -L/opt/intel/lib/intel64 -liomp5 -L/opt/intel/mkl/lib/intel64 -lmkl_rt -lmkl_core -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_gf_ilp64 -lgomp -lpthread -shared -Wl,-soname,libblas.so.3gf -o libblas.so.3gf. $ sudo mkdir /usr/local/lib/MKL $ sudo cp libblas.so...
2017 Dec 01
2
undefined symbol: sgemv_thread_n
Hi there, On 1 December 2017 at 23:24, G?ran Brostr?m wrote: | Dirk, | | thanks for your help. At work I have (ubuntu 16.04): | | ii libblas-common 3.6.0-2ubuntu2 amd64 Dependency package for | all BLAS implementations | ii libblas-dev 3.6.0-2ubuntu2 amd64 Basic Linear Algebra | Subroutines 3, static library | ii libblas3 3.6.0-2ubuntu2 amd64 Basic Linear Algebra | Reference implementations, shared...
2017 Dec 01
3
undefined symbol: sgemv_thread_n
...s-posting! > | > | I'm on Ubuntu artful, and upgraded with 'apt'. Then > | > | ---------------------------------------------------------------- > | goran at M6800:~/src/R-3.4.3$ /usr/bin/R > | /usr/lib/R/bin/exec/R: symbol lookup error: > | /usr/lib/x86_64-linux-gnu/libblas.so.3: undefined symbol: sgemv_thread_n > | ---------------------------------------------------------------- > | > | Never seen this before. What can I do? > > At home: > > edd at bud:~$ COLUMNS=70 dpkg -l | grep blas > ii libblas-common 3.7.0-1 amd64 Dependency...
2005 Jul 23
1
Package libblas.so.3 not found installing R2.1.1 on Linux FC4
I am trying to install R.2.1.1 under Linux FC4 using RPM. During the installation I get the following message: The following package could not be found on your system. Installation cannot continue until it is installed. The package in question of libblas.so.3. Does anyone know where I can get the package? Can I use RPM to intall the package? Thanks, John John Sorkin M.D., Ph.D. Chief, Biostatistics and Informatics Baltimore VA Medical Center GRECC and University of Maryland School of Medicine Claude Pepper OAIC University of Maryland School of...
2002 Jul 11
3
Can't start R in Debian Woody
Hi, I know this is not a problem comming from R, but maybe you can still help me. I installed R 1.4.1 on Debian Woody, but I can't start it. I get this message: ~$ R /usr/lib/R/bin/R.bin: error while loading shared libraries: libblas.so.2: cannot open shared object file: No such file or directory Any thoughts? S?bastien Plante -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or...
2017 Dec 01
3
undefined symbol: sgemv_thread_n
...suited for asking here. Apologies for the cross-posting! I'm on Ubuntu artful, and upgraded with 'apt'. Then ---------------------------------------------------------------- goran at M6800:~/src/R-3.4.3$ /usr/bin/R /usr/lib/R/bin/exec/R: symbol lookup error: /usr/lib/x86_64-linux-gnu/libblas.so.3: undefined symbol: sgemv_thread_n ---------------------------------------------------------------- Never seen this before. What can I do? G?ran Brostr?m
2020 Jul 15
2
Openblas?
...old (twentieth century) C-code with frequent calls to blas and lapack routines. I have the following options on my Ubuntu 20.04 machine: Selection Path Priority Status ------------------------------------------------------------ * 0 openblas-pthread/libblas.so.3 100 auto mode 1 blas/libblas.so.3 10 manual mode 2 openblas-openmp/libblas.so.3 95 manual mode 3 openblas-pthread/libblas.so.3 100 manual mode I tried all four alternatives by timing one particular function cal...
2017 Dec 01
0
undefined symbol: sgemv_thread_n
Dirk, thanks for your help. At work I have (ubuntu 16.04): ii libblas-common 3.6.0-2ubuntu2 amd64 Dependency package for all BLAS implementations ii libblas-dev 3.6.0-2ubuntu2 amd64 Basic Linear Algebra Subroutines 3, static library ii libblas3 3.6.0-2ubuntu2 amd64 Basic Linear Algebra Reference implementations, shared library...
2008 Dec 06
1
libgfortran.so.3 is needed by libblas
...to opensuse. My apology if I post on a wrong mailing list. But I really like R and want to use it on linux. The problem is I''m new to linux. I have opensuse 11.0. I download the x86_64 installer from opensuse repo. I run the installer and got error saying that libgfortran.so.3 is needed by libblas. I found libgfortran.so.3 in my /usr/lib folder (not /user/lib64). I guess it''s not on lib64 that''s why it''s complaining. So I create a symbolic link to libgfortran.so.3 from lib to lib64. It still doesn''t work. I try to install libgfortran from opensuse dvd i...
2008 Oct 02
1
KernSmooth not loading in R 2.7.2
...(0x00007fff3a5fe000) libRblas.so => not found libgfortran.so.2 => /usr/lib/libgfortran.so.2 (0x00007fb132100000) libm.so.6 => /lib/libm.so.6 (0x00007fb131e7e000) libR.so => /usr/lib/R/lib/libR.so (0x00007fb13195e000) libc.so.6 => /lib/libc.so.6 (0x00007fb1315fc000) libblas.so.3gf => /usr/lib/libblas.so.3gf (0x00007fb131381000) libreadline.so.5 => /lib/libreadline.so.5 (0x00007fb131141000) libpcre.so.3 => /usr/lib/libpcre.so.3 (0x00007fb130f1b000) libz.so.1 => /usr/lib/libz.so.1 (0x00007fb130d03000) libdl.so.2 => /lib/libdl.so.2 (0x00007fb1...
2014 Mar 27
2
mclapply Segmentation Fault for Ubuntu
...lease: 7.4 Codename: wheezy How can I fix it ? I read it could be caused by particular versions of BLAS. The libraries on the Ubuntu system are dario at bioinfo:~$ ldconfig -p | grep blas libnetblast.so.6 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libnetblast.so.6 libblastcompadj.so.6 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libblastcompadj.so.6 libblastapi.so.6 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libblastapi.so.6 libblast.so.6 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libblast.so.6 libblas.so.3 (libc6,x86-64) => /us...
2011 Jan 26
1
Compilation errors when installing gee
Hi, I am trying to install gee on our server but I get the error below. I do not have root on this machine so no control on how R was installed itself. It looks like it cannot find blas libs, the only ones i can find on the machine are: /usr/lib64/libblas.so.3 -> libblas.so.3.0.3 /usr/lib64/libblas.so.3.0 -> libblas.so.3.0.3 /usr/lib64/libblas.so.3.0.3 and : $ R CMD config BLAS_LIBS -lblas Any ideas how to get this package to install? (sessionInfo() at the bottom of email) thanks for any help adam > install.packages("gee")...
2010 Apr 09
2
problems loading blas with R 2.11.0~20100402-1
Hi, Since upgrading to version 2.11.0~20100402-1, starting R fails with: /usr/lib64/R/bin/exec/R: error while loading shared libraries: libblas.so.3gf: cannot open shared object file: No such file or directory Is this occurring to others on sid? -- Seb
2003 Oct 06
1
Installing R in Linux 8.0
I am trying to install R in Linux 8.0 and I downloaded "R-1.7.1-1.i386.rpm" and did rpm -hiv R-1.7.1-1.i386.rpm and I am getting the following message: warning: R-1.7.1-1.i386.rpm: V3 DSA signature: NOKEY, key ID 97d3544e error: Failed dependencies: libblas.so.3 is needed by R-1.7.1-1 Then I went and look for libblas (which is a linear algebra library) that I found in http://www.hklpg.org/RPM/libblas.so.3.html and downloaded blas-3.0-9.1mlx.i386.rpm Tried to do rpm -hiv blas-3.0-9.1mlx.i386.rpm and got...
2023 Dec 30
2
custom built R will not change BLAS/LAPACK with update-alternatives
.../cran.r-project.org/doc/manuals/r-release/R-admin.html#BLAS). This concerns me in so far as it suggests that I am missing something rather obvious. Thanks, R. Details of the steps I am following. 1. update-alternatives: use Atlas (lower priority than OpenBLAS) update-alternatives --config libblas.so.3-x86_64-linux-gnu There are 3 choices for the alternative libblas.so.3-x86_64-linux-gnu (providing /usr/lib/x86_64-linux-gnu/li Selection Path Priority Status ------------------------------------------------------------ 0...
2020 Apr 30
2
problem with `viridis` on Ubuntu 20.04
...Ubuntu 20.04 could reproduce. > after some further investigation I found out that the issue was related to some calls to the `solve` function in `make.rgb`, and indeed running `example(solve)` would hang my R session. After I changed the default BLAS with: sudo update-alternatives --config libblas.so.3-x86_64-linux-gnu the problem disappeared. The BLAS output of `sessionInfo` now that `solve` is working is: Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 while before when `solve` was not w...
2008 Aug 12
1
Conflict between octave3.0-headers and r-base-dev
Hi, I'm using Ubuntu Hardy i386, and the R 2.7.1 Ubuntu packages from CRAN. The CRAN r-base-dev package depends on refblas3-dev or atlas3-base-dev, but octave3.0-headers depends on libblas-dev. The two blas packages seem to conflict, so r-base-dev and octave3.0-headers can't be installed together. Is this a known issue? Thanks, Gad $ sudo apt-get install octave3.0-headers Reading package lists... Done Building dependency tree Reading state information... Done The following...
2008 Nov 15
2
Update to 2.8 and problem with liblapack
...lapack packages (excuse me it is in french): > sudo apt-get install r-base-dev > Lecture des listes de paquets... Fait > Construction de l'arbre des d?pendances > Lecture des informations d'?tat... Fait > Les paquets suppl?mentaires suivants seront install?s : > libblas-dev liblapack-dev r-base-core tcl8.5 tk8.5 > Paquets sugg?r?s : > cdbs > Les paquets suivants seront ENLEV?S : > refblas3-dev > Les NOUVEAUX paquets suivants seront install?s : > libblas-dev liblapack-dev tcl8.5 tk8.5 > Les paquets suivants seront mis ? jour : > r-b...