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...E=letter CFLAGS="-g -O2 -p -pg" CPPFLAGS="-I/opt/intel/mkl/10.0.1.014/include -I/usr/include -I/usr/local/include" LIBnn=lib64 BLAS_LIBS="-L/opt/intel/mkl/10.0.1.014/lib/em64t -Wl,--start-group -lmkl_gf_lp64.so -lmkl_gnu_thread.so -lmkl_core.so -l -l -l -Wl, --end-group -lguide -lpthread -lm" I have set the CONFIG_SITE environment variable to the location of the config.site.file. I am doing everything as superuser. The command I am using for configure is ./configure --disable-R-profiling --with-blas=no following the instructions in the R-admin file regarding en...

...lier versions of R as well) using external BLAS and LAPACK libraries _and_ generating libR.so, libRblas.so and libRlapack.so. Without --enable-BLAS-shlib, configure is able to find and use the external LAPACK library: ./configure \ --with-blas="-L/site/intel/cmkl/8.1/lib/em64t -lmkl -lvml -lguide -lpthread" \ --with-lapack="-L/site/intel/cmkl/8.1/lib/em64t -lmkl_lapack64 -lmkl" \ --enable-R-shlib [...] External libraries: readline, BLAS(generic), LAPACK(generic) Additional capabilities: PNG, JPEG, iconv, MBCS, NLS Options enabled: shared R librar...

Hi all, I'm trying to build R from subversion with MKL 10.0.2 on Ubuntu. I tried: ./configure --with-blas='-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lguide' --with-lapack='/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lmkl_lapack' --enable-R-shlib and got: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/local C compiler: gcc -std=gnu99 -g -O2 Fortran 77...

Hi all, I'm trying to build R from subversion with MKL 10.0.2 on Ubuntu. I tried: ./configure --with-blas='-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lguide' --with-lapack='/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lmkl_lapack' --enable-R-shlib and got: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/local C compiler: gcc -std=gnu99 -g -O2 Fortran 77...

...ran64_int64/lib -lacml" LAPACK=--with-lapack # MKL 11: BLAS=--with-blas="-L/site/VERSIONS/intel-11.1/mkl/lib/em64t -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -lmkl_core" LAPACK=--with-lapack # MKL 8.1, trad. way: BLAS=--with-blas="-L/site/intel/cmkl/8.1/lib/em64t -lmkl -lvml -lguide -lpthread" LAPACK=--with-lapack I configure R like this: export CFLAGS="-O3 -mtune=opteron" export FFLAGS="-O3 -mtune=opteron" export CXXFLAGS="-O3 -mtune=opteron" export FCFLAGS="-O3 -mtune=opteron" ./configure --prefix="/site/VERSIONS/R-2.11.1...

I believe that actually means configure was able to use the BLAS you specified (MKL in this case). You can scan through config.log to make sure. Andy > From: > > Fedora Core 3 > > I installed the Intel MLk, > > and tried : --with-blas="-lmkl -lguide -lpthread" > > and got : External libraries: readline, BLAS(generic) > > thus I'm assuming I'm missing something when telling config where to > look for the recently installed Intel BLAS? > > thanks for all replies thus far. > > > On Wed, 2...

....0.1.014/lib/em64t/libmkl_gf_lp64.a /usr1/util/Intel/mkl/10.0.1.014/lib/em64t/libmkl_gnu_thread.a /usr1/util/Intel/mkl/10.0.1.014/lib/em64t/libmkl_core.a -Wl,--end-group -liomp5 -lguide -lpthread -lgomp... no checking for dgemm_... no checking for ATL_xerbla in -latlas... yes checking for dgemm_ in -lf77blas... no checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -lessl... no checking for...

...ers using the following options: CFLAGS = '-O2 -mp -prec_div' CXXFLAGS = '-O2 -mp -prec_div' FFLAGS = '-C90 -w90 -w95 -mp -prec_div' CPIPCFLAGS = -shared CXXPIPCFLAGS = -shared FPIPCFLAGS = -shared SHLIB_LDFLAGS = -shared SHLIB_CXXLDFLAGS = -shared --with-blas = '-lmkl -lguide -lpthread' The compilation went fine (just a few warnings). There was apparently a single problem when I ran "make check". It was in: d-p-q-r-tests.R at line 469: All.eq(dpois( 10, 2e-308, log=TRUE), -7100.13502718914) which returned -Inf with the Intel compiled version. I do...

I would like to build R and packages with the Intel 10.1 compilers in RHEL4. Using the flags below, I can successfully build R using a vanilla ./configure, but when I install new packages they build with gcc. My sysadmin suggested adding the flags to ./configure as illustrated below, but then the R build blows up with the config tail output that follows far below. It looks like gcc is still being

Full_Name: Reinhold Bader Version: 2.1.0 OS: SLES 9 Submission from: (NULL) (129.187.48.1) I tried to build R using the Intel compilers (icc, ifort) and the Math Kernel Libraries for BLAS/LAPACK Optimizations used were -O3, and the FPICFLAGS="-fpic" was exported. The build failed with the following error message: ... dumping R code in package 'methods' Saving namespace image

Dear R friends My goal is to eliminate this specific group(1) if the # of NAs in this group greater than 50%(specifically say greater than 3). Would you please show me how to do it. I have a sample data as following: Thanks a lot. Kevin Lin y group f1 f2 f3 30 NA 1 1 1 1 27 NA 1 1 2 2 48 NA 1 2 1 2 40 -0.6066416 1 2 2 1 24