search for: ldpaths

...all R under Ubuntu 7.10 (gutsy; Linux 2.6.22-15-generic x86_64). Following the instructions at http://cran.r-project.org/bin/linux/ubuntu/README, I installed r-base, r-base-core, and r-base-dev without any problems. When I open R, however, I get the message "Can't open /usr/lib64/R/etc/ldpaths". That file is linked to /etc/R/ldpaths, which doesn't exist on my system. root# ls -l /usr/lib64/R/etc/ldpaths 2008-09-24 13:44 /usr/lib64/R/etc/ldpaths -> /etc/R/ldpaths root# ls /etc/R root# In fact, there doesn't appear to be an 'ldpaths' file anywhere, ot...

...on I am on FC23 and have no problem with > the java JDK available from the Fedora repository (Current version > 1.8.0_77). I suggest you use that and not the Oracle one. > > Martyn There isn't any issue anymore, the error was related to lack of permissions. # stat /usr/lib64/R/etc/ldpaths File: ?/usr/lib64/R/etc/ldpaths? Size: 611 Blocks: 8 IO Block: 4096 regular file Device: fd00h/64768d Inode: 13762870 Links: 1 Access: (0600/-rw-------) Uid: ( 0/ root) Gid: ( 0/ root) Context: unconfined_u:object_r:lib_t:s0 ... # chmod go+r /usr/lib64/R/etc...

Hi I'm trying to install R on Ubuntu 11.10 and it seems to install fine with both apt-get and dpkg but always when I start R I get jt42@bioinf4:~# R /usr/local/bin/R: line 237: /usr/lib/R/etc/ldpaths: No such file or directory R version 2.14.0 (2011-10-31) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) I read something about creating a soft link from /usr/lib64 to /usr/lib but that just changes the er...

I've just installed r-base (several times!) using the instructions at http://cran.us.r-project.org/bin/linux/ubuntu/ and for some reason it is not creating a /etc/R/ldpaths file. I've tried a few times, tried purging, and removing everything in /etc/R and /usr/lib/R as suggested by Dirk, and reinstalling but still get $ R /usr/bin/R: line 236: /usr/lib/R/etc/ldpaths: No such file or directory R version 3.0.2 (2013-09-25) -- "Frisbee Sailing" Copy...

...5-64bit-base \ --exec-prefix=/mnt/ami-centos5.5-64bit-base \ --with-tcltk All seemed to go well, but when I tested it with: /usr/sbin/chroot /mnt/ami-centos5.5-64bit-base R It told me: /bin/R: line 217: /mnt/ami-centos5.5-64bit-base/lib64/R/etc/ldpaths: No such file or directory Question: How can I direct ldpaths file into this directory? Thank you for your help. Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

When using R on a linux machine (ubuntu 8.10) which DOES NOT have LD_LIBRARY_PATH set (I particularly have it NOT set because it causes problems), the script ldpaths will set LD_LIBRARY_PATH to the R Lib path (in my case $R_HOME/lib:). The placement of the colon makes my system think that the directory "." is also on that lib path. This causes real problems when trying to run R with a remote mounted file structure (over sshfs). In particular, t...

Hello! I'm trying to install R-3.0.1 on an Ubuntu machine (64 bit, version 13.04). I have uninstalled and installed several times, but to no avail. I keep getting errors about missing ldpaths, and installing packages does not work at all. Here is the information: erin@erin-Lenovo-IdeaPad-Y480:~$ sudo apt-get install r-base Reading package lists... Done Building dependency tree Reading state information... Done The following extra packages will be installed: cdbs dh-translations intlt...

$ R /usr/bin/R: line 238: /usr/lib64/R/etc/ldpaths: Permission denied $ rpm -q R R-3.2.3-2.fc23.x86_64 That /usr/bin/R#L238 is: . "${R_HOME}/etc${R_ARCH}/ldpaths" I noticed the error began bursting shortly after I ran dnf update. An excerpt from dnf's transaction logs: $ dnf history info <ID> Upgraded setroubleshoot-3.3.5-2.f...

Hello, I am having the following error while calling an R script through PHP. /usr/local/bin/R: line 227: /kk/Programs/R-2.13.0/etc/ldpaths: Permission denied ERROR: R_HOME ('/kk/Programs/R-2.13.0') not found I had compiled R from source and placed the generated R shell script in /usr/local/bin. Can you give me an insight of how to give permission to access the ldpaths file and why is the R_HOME tree not found? Thank you and...

Full_Name: Jori M?ntysalo Version: 2.3.1 OS: Linux, GNU/Debian stable Submission from: (NULL) (81.197.171.182) I said ./configure --with-readline=no --with-x=no make make install and everything works except that /usr/local/lib/R/etc/ldpaths was not readable as normal user.

Has anyone successfully installed rJava on Debian squeeze (or any other version of linux)? I keep getting the ... (JDK) is missing or not registered in R error message when installing the package. I've tried running 'R CMD javareconf', setting JAVA_HOME and editing /etc/R/ldpaths by hand, but to no avail. The problem might be related to the R_JAVA_LD_LIBRARY_PATH that's set in /etc/R/ldpaths. Does anyone know what it's supposed to contain? I haven't been able to find any documentation on it? Searching the web, I've found many references to this problem...

On Wed, 20 Apr 2016 20:50:57 +0000 "Ellen K" <keyes at pushyes.xyz> wrote: > From: "Ellen K" <keyes at pushyes.xyz> > To: cireyapmin at gmail.com > Subject: RE: [R-sig-Fedora] Cannot Run On The Command Line > Date: Wed, 20 Apr 2016 20:50:57 +0000 > X-Mailer: iPad Mail (12H143) > > Hi virgo, > > Thank you for your interest in the

The R front end sets (via etc/ldpath) R_LIBRARY_PATH, including R_JAVA_LD_LIBRARY_PATH. Perhaps the later is too obliging, as I've just be caught by it in a way that took me a while to track down. One of my machines has a Sun jdk1.6.0* JDK installed, and as a result we have ${R_JAVA_LD_LIBRARY_PATH=${JAVA_HOME}/lib/amd64/server:${JAVA_HOME}/lib/amd64: ${JAVA_HOME}/../lib/amd64} What I

...kipped: JPEG, TIFF Options not enabled: shared BLAS Recommended packages: yes c) But this seemingly relates to an error in the "ldpath" file at: ...R-4.3.1/etc/ldpath during the subsequent compilation step: /SOFTWARE/CODE-R/R-BASE/v4.3.1/etc/*ldpaths*: line 16: *${}*: bad substitution make[4]: *** [../../../share/make/basepkg.mk:151: sysdata] Error 1 make[4]: Leaving directory '/SOFTWARE/CODE-R/R-BASE/v4.3.1/src/library/tools' make[3]: *** [Makefile:36: all] Error 2 make[3]: Leaving directory '/SOFTWARE/CODE-R/R-...

...atus: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: error: cannot find input file: po/Makefile.in.in For R-devel_2010-01-04.tar.bz2, ./configure runs fine. The reason could be that R-devel_2010-01-05.tar.bz2 does not contain the directory "R-devel/po". This directory is present in R-...

Hi folks, I can't get dovecot to authenticate properly against ldap/pam. I've been fiddling with it for several days now, to no avail. It keeps crashing with: Child died with signal 11 The system is Solaris9. Enclosed is a trace of dovecot-auth for a connection to pop with correct username and password and my config. Any help is appreciated. Cheers Benjamin

...t the same time.It seems that doing the second installation, I have messed up with some files or system paths, resulting in not being able to use either version of R on my system. I get the following message in terminal, whenever I try to run R now: /usr/local/bin/R: line 227: /usr/local/lib/R/etc/ldpaths: No such file or directory/usr/local/bin/R: line 250: /usr/local/lib/R/bin/exec/R: No such file or directory/usr/local/bin/R: line 250: exec: /usr/local/lib/R/bin/exec/R: cannot execute: No such file or directory I've tried to re-install R using apt-get doing: sudo apt-get updatesudo apt-get r...

I tried different versions of sma**.tar.gz file either with "R CMD INSTALL -l packagepath sma**.tar.gz", "R INSTALL -l path sma**.tar.gz" and under R windows by "install.packages("sma_0.5.15.tar.gz",repos=NULL)" . I got same error ====== * installing *source* package 'sma' ... ** Creating default NAMESPACE file Warning in .write_description(db,

...le.site': No such file or directory Execution halted where the dots ... specify the path to the build-R folder where R-devel was built. And I check the etc folder and indeed there is no the Rprofile.site -rw-r--r-- 1 iago iago 209 Nov 9 08:27 javaconf -rw-r--r-- 1 iago iago 770 Nov 9 08:35 ldpaths -rw-r--r-- 1 iago iago 6672 Nov 9 08:35 Makeconf -rw-r--r-- 1 iago iago 3336 Nov 9 08:27 Makefile -rw-r--r-- 1 iago iago 1853 Nov 9 08:27 Renviron -rw-r--r-- 1 iago iago 1173 Nov 9 08:32 repositories I note that make install installed R in the path I specified in ../R/configure --prefix=/wher...

...test-all-basics] Error 1 make[1]: Leaving directory `/home/markleeds/R/2.14/build/tests' make: *** [check] Error 2 # THEN TRY TO RUN R #================================================================================================== :~/R/2.14/build> R /usr/bin/R: line 229: /usr/lib/R/etc/ldpaths: No such file or directory :~/R/2.14/build> ^C :~/R/2.14/build> [[alternative HTML version deleted]]