search for: lbz2

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2015 Mar 02
2
[LLVMdev] clang change function name
Hi, I compile a .cpp with cmd: clang++ -emit-llvm -c -g -O0 -w pbzip2.cpp -o pbzip2.bc -lbz2 llvm-dis pbzip2.bc One function in .cpp is consumer_decompress. However, I look inside pbzip2.ll. The function name is changed to "define i8* @_Z19consumer_decompressPv(i8* %q) #0 {" Why clang adds a "_Z19" prefix and "Pv" suffix? Thanks,
2014 Sep 18
1
difference between install from source and install from repositories
...o. Installation from sources: R CMD config --ldflags -Wl,--export-dynamic -fopenmp -L/home/prana/prana_R/third-party/install/lib/R/lib -lR -lrt -ldl -lm R CMD config CXXFLAGS Installation from repo: R CMD config --ldflags -Wl,--export-dynamic -fopenmp -L/usr/lib/R/lib -lR -lpcre -llzma -lbz2 -lz -lrt -ldl -lm R CMD config CXXFLAGS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g These are the steps that I followed to install from sources ./configure --enable-R-shlib --with-x=no --with-readline=no --prefix=/home/prana/softwa...
2018 Feb 13
2
R Compilation gets stuck on Windows 64
...ath.a > getline/gl.a ../extra/xdr/libxdr.a ../extra/intl/libintl.a > ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/tre/libtre.a > -fopenmp -L. -lgfortran -lquadmath -lRblas -L../../lib -lRgraphapp -lRiconv > -lcomctl32 -lversion -L"D:/R64/extsoft"/lib/x64 -lpcre -lz -lbz2 -llzma > -L"D:/home/ICU"/lib/x64 -lsicuin -lsicuuc -lsicudt -lstdc++ > D:/Rtools/mingw_64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.3/../../../../x86_64-w64-mingw32/bin/ld.exe: > cannot find -lRgraphapp > collect2.exe: error: ld returned 1 exit status > make[4]: *** [R.dll] Err...
2015 Mar 02
2
[LLVMdev] clang change function name
...my pass, I use function name to locate. Can I disable mangling in clang? Best, Haopeng On 3/1/15 10:44 PM, John Criswell wrote: > On 3/1/15 11:38 PM, Haopeng Liu wrote: >> Hi, >> >> I compile a .cpp with cmd: >> clang++ -emit-llvm -c -g -O0 -w pbzip2.cpp -o pbzip2.bc -lbz2 >> llvm-dis pbzip2.bc >> >> One function in .cpp is consumer_decompress. However, I look inside >> pbzip2.ll. The function name is changed to "define i8* >> @_Z19consumer_decompressPv(i8* %q) #0 {" >> >> Why clang adds a "_Z19" prefix...
2015 Mar 27
2
About removing zlib from R-devel
Related to this question: I have installed bzip2 1.0.6 by hand, but configure still fails. When I look at config.log I get the following configure:34150: /usr/bin/gcc -std=gnu99 -o conftest -g -O2 -march=amdfam10 -g -O2 -march=amdfam10 -L/usr/local/lib64 confte st.c -lbz2 -lz -lrt -ldl -lm >&5 conftest.c: In function 'main': conftest.c:250: warning: initialization discards qualifiers from pointer target type conftest.c:251: warning: implicit declaration of function 'exit' conftest.c:251: warning: incompatible implicit declaration of built-in...
2015 Nov 04
0
Building R for AIX in 64-bit mode
...rt suffices configure:35719: error: bzip2 library and headers are required configure: exit 1 And after adding that: configure:35689: gcc -maix64 -std=gnu99 -o conftest -I/opt/64/include -I/opt/buildaix/include -O2 -mminimal-toc -I/opt/buildaix/include -I/opt/include -L/usr/local/lib conftest.c -lbz2 -lz -lrt -ldl -lm -liconv >&5 configure:35689: $? = 0 configure:35689: ./conftest configure:35689: $? = 1 configure: program exited with status 1 configure: failed program was: configure:35706: result: no configure:35712: checking whether bzip2 support suffices configure:35719: error: bzip...
2003 Mar 03
1
How to compile all code with the -fPIC flag? (PR#2601)
...tering directory `/home/nganm/R-1.6.2/src/modules/lapack' gcc -shared -L/usr/local/lib -o lapack.so Lapack.lo double.lo cmplx.lo -lbla s -L/usr/local/lib -L/usr/lib/gcc-lib/ia64-redhat-linux/2.96 -L/usr/lib/gcc-lib/ ia64-redhat-linux/2.96/../../.. -lreadline -ldl -lncurses -lg2c -lm -lpcre -lbz2 -lz -lreadline -ldl -lncurses -lm /usr/bin/ld: open.o: @gprel relocation against dynamic symbol f__buflen /usr/bin/ld: open.o: @gprel relocation against dynamic symbol f__buflen /usr/bin/ld: open.o: @gprel relocation against dynamic symbol f__buflen /usr/bin/ld: open.o: @gprel relocation against d...
2003 Feb 03
2
itanium
...that they used? thanks bye rob gcc -shared -L/usr/local/lib -o lapack.so Lapack.lo double.lo cmplx.lo cmplxblas.lo -L/usr/local/lib -L/usr/lib/gcc-lib/ia64-redhat-linux/2.96 -L/usr/lib/gcc-lib/ia64-redhat-linux/2.96/../../.. -lreadline -ldl -lncurses -lg2c -lm -lpcre -lbz2 -lz -lreadline -ldl -lncurses -lm /usr/bin/ld: open.o: @gprel relocation against dynamic symbol f__buflen /usr/bin/ld: open.o: @gprel relocation against dynamic symbol f__buflen /usr/bin/ld: open.o: @gprel relocation against dynamic symbol f__buflen /usr/bin/ld: open.o: @gprel relocation against dy...
2015 Nov 04
2
Building R for AIX in 64-bit mode
...ed for now - awaiting reply > configure:35724: checking for lzma_version_number in -llzma > configure:35757: gcc -maix64 -std=gnu99 -o conftest -I/opt/64/include > -I/opt/buildaix/include -O2 -mminimal-toc -I/opt/buildaix/include > -I/opt/include -L/usr/local/lib conftest.c -llzma -lbz2 -lz -lrt > -ldl -lm -liconv >&5 > configure:35757: $? = 1 > configure: failed program was: > configure:35766: result: no > configure:35851: error: "liblzma library and headers are required" > configure: exit 1 > ++++ ++++
2016 May 18
2
Latest R-devel build failing on OS X
....o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a ../extra/intl/libintl.a ../extra/tzone/libtz.a -L../../lib/x86_64 -lRblas -L/usr/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/lib -lgfortran -Wl,-framework -Wl,CoreFoundation -lreadline -lpcre -llzma -lbz2 -lz -licucore -lm -llzma -liconv > Undefined symbols for architecture x86_64: > "_rl_resize_terminal", referenced from: > _Rstd_ReadConsole in sys-std.o > ld: symbol(s) not found for architecture x86_64 > clang: error: linker command failed with exit code 1 (use -v to...
2018 Feb 09
2
R Compilation gets stuck on Windows 64
On Fri, Feb 9, 2018 at 9:29 AM, Kenny Bell <kmbell56 at gmail.com> wrote: > I suggest that you work off the build process in the rwinlib repository so > you are starting from something that you know works and already incorporates > the set of dependencies you need. Hello, Kenny. For what it's worth I've been successfully building R+OpenBLAS on Windows64 since 2013, which
2012 Sep 26
2
Bundle Install ERROR: ERROR: Failed to build gem native extension.
...I type bundle install this is the error that i get. I guess its not finding the files Gem::Installer::ExtensionBuildError: ERROR: Failed to build gem native extension. /home/taka/.rvm/rubies/ruby-1.9.3-p194/bin/ruby extconf.rb checking for bzlib.h... no checking for BZ2_bzWriteOpen() in -lbz2... no *** extconf.rb failed *** Could not create Makefile due to some reason, probably lack of necessary libraries and/or headers. Check the mkmf.log file for more details. You may need configuration options. Provided configuration options: --with-opt-dir --with-opt-include --without-opt-i...
2018 Feb 13
2
R Compilation gets stuck on Windows 64
.../libxdr.a ../extra/intl/libintl.a >> > ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/tre/libtre.a >> > -fopenmp -L. -lgfortran -lquadmath -lRblas -L../../lib -lRgraphapp >> -lRiconv >> > -lcomctl32 -lversion -L"D:/R64/extsoft"/lib/x64 -lpcre -lz -lbz2 -llzma >> > -L"D:/home/ICU"/lib/x64 -lsicuin -lsicuuc -lsicudt -lstdc++ >> > D:/Rtools/mingw_64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.3/. >> ./../../../x86_64-w64-mingw32/bin/ld.exe: >> > cannot find -lRgraphapp >> > collect2.exe: error: ld return...
2007 Feb 13
2
anyone has C++ STL classes stability issue if used with R
...pangocairo-1.0 -lfontconfig -lXext -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXfixes -lpango-1.0 -lcairo -lX11 -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0 -L/usr/lib -L/usr/X11R6/lib -lfreetype -lz -L/usr/lib -lMagick -llcms -ltiff -lfreetype -ljasper -ljpeg -lpng -lXext -lSM -lICE -lX11 -lbz2 -lxml2 -lz -lpthread -lm -lpthread -------------------------------------------------------------------------- It could be I am missing something totally simple and therefore get these errors, but I cannot identify what. Thanks for help, Oleg ----------------------------------------- // common....
2015 Nov 04
2
Building R for AIX in 64-bit mode
On 2015-10-15 15:02, Prof Brian Ripley wrote: > On 15/10/2015 13:32, Michael Felt wrote: >> Hi. >> >> Just wanted to let you know I am getting close to packaging R for AIX in >> 64.bit mode. > > Which version? (You mentioned 3.1.3 and 3.2.2 far below.) There is > little value in reporting on frozen branches, and most value in > reporting on R-devel where
2016 May 18
3
Latest R-devel build failing on OS X
...ppl/*.o ../nmath/*.o` ../extra/ > tre/libtre.a ../extra/intl/libintl.a ../extra/tzone/libtz.a -L../../lib/x86_64 -lRblas -L/usr/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/lib -lgfortran -Wl,-framework -Wl,CoreFoundation -lreadline -lpcre -llzma -lbz2 -lz -licucore -lm -llzma -liconv > Undefined symbols for architecture x86_64: > "_rl_mark", referenced from: > _popReadline in sys-std.o > "_rl_readline_state", referenced from: > _popReadline in sys-std.o > "_rl_resize_terminal", referen...
2006 Apr 03
2
Build failure with this morning's R-alpha
...e.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o `ls ../appl/*.o ../nmath/*.o ../unix/*.o 2>/dev/null` -lblas-3 -L/usr/lib/gcc/i486-linux-gnu/3.4.6 -lg2c -lm -lgcc_s -lreadline -lpcre -lbz2 -lz -ldl -lm make[5]: Entering directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main' mkdir -p -- /tmp/buildd/r-base-2.2.1.svn37626/bin/exec mkdir -p -- /tmp/buildd/r-base-2.2.1.svn37626/lib make[5]: Leaving directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main' make[4]: Leaving directory `...
2015 Jul 21
2
' --enable-R-shlib' problem when setting up R-devel in Linux Mint 17.1 64-bit
.../r-devel' as my local copy of r-devel) on: https://stat.ethz.ch/pipermail/r-sig-debian/2012-August/001935.html After running that script, the error message I get is: `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lquadmath -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n /usr/bin/ld: ../appl/dchdc.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC ../appl/dchdc.o: error adding symbols: Bad value collect2: error: ld returned 1 exit status make[3]: *** [libR.so] Error 1...
2019 Feb 16
3
Trying to compile R 3.5.2 - 32 bit R - on Windows 10 64 bit - with ICU support
.../libnmath.a getline/gl.a ../extra/xdr/libxdr.a ../extra/intl/libintl.a ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/tre/libtre.a -fopenmp -L. -lgfortran -lquadmath -lRblas -L../../bin/i386 -lRgraphapp -lRiconv -lcomctl32 -lwinmm -lversion -L"../../extsoft"/lib/i386 -lpcre -lz -lbz2 -llzma -L "w:/R-3.5._/App/R-Portable/ICU"/lib/i386 -lsicuin -lsicuuc -lsicudt -lstdc++ w:/R-3.5._/App/R-Portable/ICU/lib/i386/libsicuin.a(ucol.ao):ucol.cpp:(.text+0x15): undefined reference to `__gxx_personality_sj0' w:/R-3.5._/App/R-Portable/ICU/lib/i386/libsicuin.a(ucol.ao):ucol.cpp...
2016 May 18
0
Latest R-devel build failing on OS X
...o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a ../extra/intl/libintl.a ../extra/tzone/libtz.a -L../../lib/x86_64 -lRblas -L/usr/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/lib -lgfortran -Wl,-framework -Wl,CoreFoundation -lreadline -lpcre -llzma -lbz2 -lz -licucore -lm -llzma -liconv Undefined symbols for architecture x86_64: "_rl_resize_terminal", referenced from: _Rstd_ReadConsole in sys-std.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[3...