search for: latlas

...d cblas.so) are sitting in the folder "/usr/local/atlas/lib" (together with the static .a versions and some other files. Following the R installation manual, I used the following configure string: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -latlas -lf77blas" --with-lapack="-L/usr/local/atlas/lib -llapack -lcblas" CFLAGS='-O3 -pipe -march=native' CXXFLAGS='-O3 -pipe -march=native' R_PAPERSIZE='letter' The configuration routine returns the following errors: checking for cblas_cdotu_sub in vecLib framewo...

If I configure in R-patched and R-devel, with the same options to configure, then R-patched says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm_ in -lf77blas... yes which R-devel says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm in -lf77blas... no This is on the same computer and using the same libraries. Obser...

...o. I know almost nothing about Linux, so I apologize if the answer to this is obvious. I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu 10.04 64 bit). I configured with: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -lf77blas -latlas" --with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x and I get this error (from config.log): configure:28566: checking for dgemm_ in -L/usr/local/atlas/lib -lf77blas -latlas configure:28587: gcc -std=gnu99 -o conftest -g -O2 -fpic -I/usr/local/include -L/usr/local/lib6...

...o. I know almost nothing about Linux, so I apologize if the answer to this is obvious. I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu 10.04 64 bit). I configured with: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -lf77blas -latlas" --with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x and I get this error (from config.log): configure:28566: checking for dgemm_ in -L/usr/local/atlas/lib -lf77blas -latlas configure:28587: gcc -std=gnu99 -o conftest -g -O2 -fpic -I/usr/local/include -L/usr/local/lib6...

...on 'main': conftest.c:189: warning: implicit declaration of function 'dgemm_' /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/acml4.3.0/gfortran64/lib/libacml.so, not found (try using -rpath or -rpath-link) Try ./configure --with-blas="-L/usr/lib64/atlas -lf77blas -latlas" I get the following configure:37199: checking for dgemm_ in -L/usr/lib64/atlas -lf77blas -latlas configure:37230: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -L/usr/lib64/atlas -lf77blas -latlas -lg$ conftest.c: In function 'main': conf...

...99 -O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package ?lme4? * removing ?/home/bates/R/i686-pc-linux-gnu-library/2.12/lme4? The thing that seems t...

...a > > lot of compilation before this): > > > > cp R.dll ../../bin/ > > -------- Building ../../bin/Rblas.dll -------- > > gcc -shared -s -o ../../bin/Rblas.dll blas00.o dllversion.o Rblas.def \ > > -L../../bin -lR -L"C:/WinNT_ATHLONSSE2" -lf77blas -latlas > > What version of R is this? I get > > -------- Building ../../../bin/Rblas.dll -------- > gcc -shared -o ../../../bin/Rblas.dll blas00.o > ../../gnuwin32/dllversion.o Rbl > as.def \ > -L../../../bin -lR -L"/R/ATLAS/lib/WinNT_PM" -lf77blas -latlas -lg2c &...

....0 (2010-10-15) in accordance with the instructions on the CRAN site. All went well until I started to install the additional packages I use and found multiple cases of (e.g. for lme4) of the following compilation error: gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas ---------BUT [ 48 ] <wow> (ron) /usr/bin/R CMD config LAPACK_LIBS -llapack ---------AND <wow> (ron) dpkg -l | grep lapack ii liblapack-dev 3...

...the 32-bit and 64-bit Ubuntu packages maverick/r-base-core_2.12.1-1maverick0_i386.deb and the corresponding 64-bit version. The Make variable BLAS_LIBS is defined as -lblas on the 64-bit system $ egrep BLAS /etc/R/Makeconf BLAS_LIBS = -lblas but on the 32-bit system it is defined as -lf77blas -latlas

...latform is openSUSE 11.1 x86_64 with GCC 4.3.2. "configure" is finding the ATLAS BLAS all right, but it is not finding the ATLAS LAPACK. The configure command string is ./configure --enable-threads --disable-R-profiling \ --with-blas="-L/usr/local/atlas/lib -lptf77blas -lpthread -latlas" \ --with-lapack="-L/usr/local/atlas/lib -llapack -lptcblas" \ --with-tcltk --with-cairo --with-libpng --with-jpeglib --with-x \ 2>&1 | tee ../R-alpha-config.log Here's what's in the "R-alpha-config.log" file when it gets to the library check part: ch...

...O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package lme4 * removing /usr/local/lib/R/site-library/lme4 ---------The /usr/bin/ld: cannot find -lf...

...LAPACK. ATLAS and LAPACK compiled correctly and installed fine and passed all of their checks (and yes, I did compile them all with -fPIC as is required for R). This was my initial configure line: ./configure --with-x --enable-threads=posix --with-blas="-L/usr/local/lib -lptf77blas -lptcblas -latlas -lpthread" --with-lapack="-L/usr/local/lib -llapack -lptf77blas -lptcblas -latlas -lpthread" --prefix=/usr/local ...this configure line was chosen by examining R-admin.pdf and ./configure --help. It configured fine, no problem. The trouble was when I attempt to make the package: .....

...or message (I'm posting only the final part, there was a lot of compilation before this): cp R.dll ../../bin/ -------- Building ../../bin/Rblas.dll -------- gcc -shared -s -o ../../bin/Rblas.dll blas00.o dllversion.o Rblas.def \ -L../../bin -lR -L"C:/WinNT_ATHLONSSE2" -lf77blas -latlas C:/WinNT_ATHLONSSE2/libf77blas.a(xerbla.o):xerbla.f:(.text+0xb): undefined refer ence to `s_wsfe' C:/WinNT_ATHLONSSE2/libf77blas.a(xerbla.o):xerbla.f:(.text+0x27): undefined refe rence to `do_fio' C:/WinNT_ATHLONSSE2/libf77blas.a(xerbla.o):xerbla.f:(.text+0x43): undefined refe rence to `do_...

...lust and mboost. In both cases, the error I got mentioned lf77blas. Here's the output for mboost: * Installing *source* package 'mboost' ... ** libs gcc -std=gnu99 -I/usr/share/R/include -fpic -g -O2 -c mboost.c -o mboost.o gcc -std=gnu99 -shared -o mboost.so mboost.o -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status make: *** [mboost.so] Error 1 ERROR: compilation failed for package 'mboost' I guess this has something to do with the removal of the g77 package from Ubuntu 8.10. Is there anything...

...O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package lme4 * removing /usr/local/lib/R/site-library/lme4 ---------BUT [ 48 ] <wow> (ron) /us...

...l 7.3.0). The error msg starts as follows, and has several more errors. gcc -dynamiclib -L/sw/lib -L/usr/local/lib -install_name /Library/Frameworks/R.f ramework/Versions/1.9.0/Resources/bin/libRlapack.dylib -o libRlapack.dylib dlapa ck0.lo dlapack1.lo dlapack2.lo dlapack3.lo cmplx.lo -lf77blas -latlas -L/sw/lib -L/usr/local/lib -L/sw/lib/gcc/powerpc-apple-darwin7.2.0/3.4 -L/sw/lib/gcc/powe rpc-apple-darwin7.2.0/3.4/../../.. -lfrtbegin -lg2c -lSystem ld: common symbols not allowed with MH_DYLIB output format with the -multi_modul e option /sw/lib/libg2c.a(err.o) definition of common _f__cblank (...

Greetings, I have a computer with the following setup: 1)cblfs (pure 64-bit (amd64) linux), kernel2.6.34 gcc4.4.2 2)R-2.11.1 I compiled R with BLAS and lapack using the switched ( --with-blas="- lpthread -latlas -lfptf77blas" --with-lapack="-llapack -lcblas" ). (( http://cran.r-project.org/doc/manuals/R-admin.html#Linear-algebra) ) Prior to compiling R-2.11.1 sh conigure --help gave options including the following SHLIB_LD command for linking shared libraries...

...cpoly.o g77 -mieee-fp -fPIC -g -O2 -c rlbin.f -o rlbin.o g77 -mieee-fp -fPIC -g -O2 -c sdiag.f -o sdiag.o g77 -mieee-fp -fPIC -g -O2 -c sstdiag.f -o sstdiag.o gcc -shared -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o linbin2D.o linbin.o locpoly.o rlbin.o sdiag.o sstdiag.o -lf77blas -latlas -L/usr/lib/gcc-lib/i486-linux/3.3.2 -L/usr/lib/gcc-lib/i486-linux/3.3.2/../../.. -lfrtbegin -lg2c-pic -lm -lgcc_s -L/usr/lib/R/bin -lR /usr/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status make: *** [KernSmooth.so] Error 1 ERROR: compilation failed for package 'KernSmooth'...

...c -g -Wall -I/usr/local/taucs/src -I/usr/local/taucs/build/linux -c hattrace.c -o hattrace.o gcc -g -L/usr/local/taucs/external/lib/linux -L/usr/local/taucs/lib/linux -L/usr/local/lib -L/opt/gnome/lib -L/usr/lib/R/lib -shared -fpic -o hattrace.so hattrace.o -ltaucs -llapack -lf77blas -lcblas -latlas -lmetis -lm -lg2c -lR I tried the following test commands: library(splines) library(SparseM) B <- splineDesign(knots = 1:10, x = 4:7) D <- diff(diag(dim(B)[2]), differences = 1) BB <- t(B) %*% B S <- as.matrix.ssc(BB + t(D) %*% D) if (!is.loaded(symbol.C("hattrace"))) { dyn....

Hi, I want to install "Matrix" using > install.packages("Matrix") After a while I get: checking whether we are using GNU C... yes checking whether gcc accepts -g... yes checking for ATL_xerbla in -latlas... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lscs... no checking for dgemm_ in -lcomplib.sgimath... no checking for zherk in -lblas... no checking for dgemm_ in -lblas... no could not find your BLAS library ERROR: Configuration failed for pac...