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Dear developers, has anyone experienced the problem described below? Is it a bug in handling interrupts in R? Best, Oleg -------- Original Message -------- Subject: Re: [BioC] 'recursive default argument' error in GOENTREZID2GO From: Diego Diez <diez at kuicr.kyoto-u.ac.jp> ...steps that use to reach me to that point. It happens with any environment, or at least annotation packages stored as environments. I can't think of any reason why this happens but let me show you the code: > library(rae230a) > xx <- as.list(rae230aENTREZID) ^C &g...

Hi all, I'm still a bit new to R and I'm trying to figure something out. I have the solution but the solution is what a C programmer would do :-) and I was wondering if someone could tell me the R way of doing it... What I have is a vector x of length |x|. And a matrix y of size m rows and n columns where n = |x|. I want to plot m * n points on a graph so that the x-coordinates

...ion let me know. Thank you very much for your help! Diego. ----------------------------------------- Diego Díez, PhD. Bioknowledge systems, Kanehisa lab. Bioinformatics center, Institute for Chemical Research, Kyoto University. Gokasho, Uji, Kyoto 611-0011 JAPAN. e-mail: diez@kuicr.kyoto-u.ca.jp url: http:// tlf: +81-774-38-3296 fax: + ----------------------------------------- [[alternative HTML version deleted]]

I don't know from the nortest package, but it should ***always*** be the case that you test hypotheses H_0: The data have a normal distribution. vs. H_a: The data do not have a normal distribution. So if you get a p-value < 0.05 you can say that ***there is evidence*** (at the 0.05 significance level) that the data are not from a normal distribution. If the nortest package does

Hi all, I am trying to figure out the formula used by R's Spearman rho (using cor(method="spearman")) because I can't seem to get the same value as by calculating "by hand". Perhaps I'm using "cor" wrong, but I don't know where. Basically, I am running these commands: > y=read.table(file="tmp",header=TRUE,sep="\t") >

Full_Name: Diego Diez Version: 2.3.1 OS: Mac OSX 10.4.6 Submission from: (NULL) (133.103.101.222) When running R in a X11 terminal, and trying to download a file with a wrong url with method "internal", R segfaults. This does not happen when using R.app with same method (??) or using "wget" method. For example: >

Hi, I'm using the power.law.fit function from the igraph package to fit a power law distribution to some data. This function returns the power law exponent as it's only result. I would like to have some sort of goodness-of-fit and/or error estimate of the exponent returned. This paper: http://www.edpsciences.org/articles/epjb/pdf/2004/18/b04111.pdf suggests using the