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keno
2013 Jul 02
2
Recoding variables based on reference values in data frame
...AA ID4 _ _ _ _ ID5 CC GG CC AA ID6 CC GG CC
AA ID7 CC GG CT AA ID8 _ _ _ _ ID9 CT GG
CC AG ID10 CC GG CC AA ID11 CC GG CT AA
ID12 _ _ _ _ ID13 CC GG CC AA
The name of the data file is Kgeno.
What I would like to do is recode all of the genotype values to standard
integer notation, based on their values relative to the reference rows
(Maj_Allele and Min_Allele). Standard notation sums the total of minor
alleles in the genotype, so values can be 0, 1 or 2.
Here are the changes I want t...