Displaying 10 results from an estimated 10 matches for "kallioniemi".
2024 Jul 11
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
...Add-apt-repository ?deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/?
It?s good to know about installations for Bioconductor. I am not currently using it, but I may need it in the future for other projects.
Br,
Lauren
--
Lauren J. Gerber
Bioinformatician
Precision Systems Medicine (Kallioniemi) Research Group
iCAN ? Digital Precision Cancer Medicine Flagship
Institute for Molecular Medicine Finland (FIMM)
Nordic EMBL Partnership for Molecular Medicine
Biomedicum Helsinki 2U, D301a1
P.O. Box 20 (Tukholmankatu 8)
FI-00014 University of Helsinki, Finland
lauren.gerber at helsinki.fi
From:...
2024 Jul 11
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
...Add-apt-repository ?deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/?
It?s good to know about installations for Bioconductor. I am not currently using it, but I may need it in the future for other projects.
Br,
Lauren
--
Lauren J. Gerber
Bioinformatician
Precision Systems Medicine (Kallioniemi) Research Group
iCAN ? Digital Precision Cancer Medicine Flagship
Institute for Molecular Medicine Finland (FIMM)
Nordic EMBL Partnership for Molecular Medicine
Biomedicum Helsinki 2U, D301a1
P.O. Box 20 (Tukholmankatu 8)
FI-00014 University of Helsinki, Finland
lauren.gerber at helsinki.fi
From:...
2024 Jul 10
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
...orked ?:
/# apt-cache policy r-base-core
r-base-core:
Installed: 4.4.1-1.2204.0
Candidate: 4.4.1-1.2204.0
Version table:
*** 4.4.1-1.2204.0 100
100 /var/lib/dpkg/status
This is great. Thank you all so much.
Br,
Lauren
--
Lauren J. Gerber
Bioinformatician
Precision Systems Medicine (Kallioniemi) Research Group
iCAN ? Digital Precision Cancer Medicine Flagship
Institute for Molecular Medicine Finland (FIMM)
Nordic EMBL Partnership for Molecular Medicine
Biomedicum Helsinki 2U, D301a1
P.O. Box 20 (Tukholmankatu 8)
FI-00014 University of Helsinki, Finland
lauren.gerber at helsinki.fi
From:...
2024 Oct 15
2
R Package: 'ggbreak' in Dockerfile
...am12", "param13", "param14", "param15", "param16", "param17", "param18", "param19"]
Would you please advise?
Thank you in advance for your help.
Br,
Lauren
--
Lauren J. Gerber
Bioinformatician
Precision Systems Medicine (Kallioniemi) Research Group iCAN Digital Precision Cancer Medicine Flagship Institute for Molecular Medicine Finland (FIMM) Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki 2U, D301a1 P.O. Box 20 (Tukholmankatu 8)
FI-00014 University of Helsinki, Finland lauren.gerber at helsinki.fi
[[alt...
2024 Oct 15
2
R Package: 'ggbreak' in Dockerfile
...am12", "param13", "param14", "param15", "param16", "param17", "param18", "param19"]
Would you please advise?
Thank you in advance for your help.
Br,
Lauren
--
Lauren J. Gerber
Bioinformatician
Precision Systems Medicine (Kallioniemi) Research Group
iCAN ? Digital Precision Cancer Medicine Flagship
Institute for Molecular Medicine Finland (FIMM)
Nordic EMBL Partnership for Molecular Medicine
Biomedicum Helsinki 2U, D301a1
P.O. Box 20 (Tukholmankatu 8)
FI-00014 University of Helsinki, Finland
lauren.gerber at helsinki.fi
[[alt...
2024 Oct 15
1
R Package: 'ggbreak' in Dockerfile
..."4.4.1"
utils "utils" "/usr/lib/R/library" "4.4.1"
As you can see, ggbreak is not there. Please let me know if you have any additional thoughts.
Br,
Lauren
--
Lauren J. Gerber
Bioinformatician
Precision Systems Medicine (Kallioniemi) Research Group
iCAN ? Digital Precision Cancer Medicine Flagship
Institute for Molecular Medicine Finland (FIMM)
Nordic EMBL Partnership for Molecular Medicine
Biomedicum Helsinki 2U, D301a1
P.O. Box 20 (Tukholmankatu 8)
FI-00014 University of Helsinki, Finland
lauren.gerber at helsinki.fi
From:...
2024 Oct 15
1
R Package: 'ggbreak' in Dockerfile
Lauren,
On 15 October 2024 at 13:51, Gerber, Lauren J wrote:
| I just tried fixing my script and added library(BiocManager) before library
| (ggbreak), then rebuilt the image, and am still getting the same error.
You need _two_ distinct commands. First
install.packages("BiocManager")
and second once that is done use it to install 'ggbreak' from BioConductor
2024 Jul 10
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
...orked ?:
/# apt-cache policy r-base-core
r-base-core:
Installed: 4.4.1-1.2204.0
Candidate: 4.4.1-1.2204.0
Version table:
*** 4.4.1-1.2204.0 100
100 /var/lib/dpkg/status
This is great. Thank you all so much.
Br,
Lauren
--
Lauren J. Gerber
Bioinformatician
Precision Systems Medicine (Kallioniemi) Research Group
iCAN ? Digital Precision Cancer Medicine Flagship
Institute for Molecular Medicine Finland (FIMM)
Nordic EMBL Partnership for Molecular Medicine
Biomedicum Helsinki 2U, D301a1
P.O. Box 20 (Tukholmankatu 8)
FI-00014 University of Helsinki, Finland
lauren.gerber at helsinki.fi
From:...
2024 Jul 09
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
Hi Dirk and Marco,
I need to test some of the suggested solutions and circle back here.
Thank you so much for your help.
Br,
Lauren
--
Lauren J. Gerber
Bioinformatician
Precision Systems Medicine (Kallioniemi) Research Group
iCAN ? Digital Precision Cancer Medicine Flagship
Institute for Molecular Medicine Finland (FIMM)
Nordic EMBL Partnership for Molecular Medicine
Biomedicum Helsinki 2U, D301a1
P.O. Box 20 (Tukholmankatu 8)
FI-00014 University of Helsinki, Finland
lauren.gerber at helsinki.fi
From:...
2024 Jul 10
1
Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image
Lauren,
I am now back home where looking into these things is a little easier. From
your first email to me, I started off with the selenium container you
mentioned as your starting point.
And that basically is your issue. It is a 'high-level' container, and it sets
a user. (Essentially) all other Dockerfiles you have seen and been pointed at
are 'lower-level' and operate as root