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..."package:methods" "package:stats" [5] "package:graphics" "package:utils" "Autoloads" "package:base" [1] 0 > Thanks, Gardar ___________________________________________________________________ Gardar Johannesson Lawrence Livermore National Laboratory 7000 East Avenue, L-229 Livermore, CA 94550 johannesson1@llnl.gov Tel: (925) 422-3901, Fax: (925) 422-4141 [[alternative HTML version deleted]]

...ibute, however, if I don't create the 'n.ch' attribute, it finds it! That is: > tmp <- list(id=1) > attr(tmp,'n') NULL > attr(tmp,'n') <- 1 > attr(tmp,'n') [1] 1 > -- _________________________________________________________ Gardar Johannesson Department of Statistics The Ohio State University 304E Cockins Hall, 1958 Neil Ave. Columbus, OH 43210 Email: gardar at stat.ohio-state.edu Tel: (614) 292-1567 Web: www.stat.ohio-state.edu/~gardar Fax: (614) 292-2096 _________________________________________________________...

...RES STATE TIME CPU COMMAND 18068 gardar 1 32 0 244M 241M sleep 0:14 0.02% R.bin My question is; are gc() and unix top telling the same memory story? If not, which one is not getting it right? Cheers, Gardar ________________________________________________________ Gardar Johannesson Department of Statistics Ohio State University 304E Cockins Hall, 1958 Neil Av. Columbus, OH 43210 _________________________________________________________ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hor...

...have set the problem up with solve.QP and just the non-negativity constraints along the lines of: y as the data vector X as the design matrix D <- t(X) %*% X d <- t(t(y) %*% X) A <- diag(ncol(X)) b <- rep(0,ncol(X)) fit <- solve.QP(D=D,d=d,A=t(A),b=b,meq=0) (as per Gardar Johannesson '01) When I try to add the extra constraint that sum(weights)=1 I get errors owing to incompatibility of matrices. I add the constraint by putting an extra column of all ones to A and setting meq=1. I can work round it I think, by using an intercept and using the extra column on the matri...

...n this case one does only need to carry out the symbolic factorization _once_ and then follow that up with a numerical factorization for each of the Q_i's (re-using the general symbolic factorization each time). Does anybody know if this is possible using the Matrix package? Thanks, Gardar Johannesson Lawrence Livermore National Laboratory

Thank you Brian Ripley, Gardar Johannesson, and Marcel Wolbers for your prompt and friendly help! I will share any further learnings as I move through these suggestions. -Bob Abugov Brian Ripley wrote: I just use optim() on the sum of squares with non-negativity constraints. That did not exist in 1999. Gardar Johannesson wrote: You...

...e efficiently, that is, not using as much CPU time as in the above case? Thanks, Gardar I'm using version 1.1.0 on: Machine hardware: sun4u OS version: 5.7 Processor type: sparc Hardware: SUNW,Ultra-250 _________________________________________________________ Gardar Johannesson Home Addr. Department of Statistics 605 Dennison, #3 Ohio State University Columbus, OH 43215 305A Cockins Hall, 1958 Neil Av. Tel: 614-531-0102 Columbus, OH 43210 ( cellular ) Tel: 614-292-6038 Fax: 614-292-2096 e-mail: gardar a...

...c user CPU time 4) The result of system.time(B <- A %*% A) where A is 500x500 matrix. R-1.4.0-def: 18.83 sec user CPU time R-1.4.0-opt: 0.37 sec user CPU time I hope this will be of use to somebody... cheers, Gardar _________________________________________________________ Gardar Johannesson Department of Statistics Ohio State University 304E Cockins Hall, 1958 Neil Av. Columbus, OH 43210 Tel: 614-292-1567 Fax: 614-292-2096 e-mail: gardar at stat.ohio-state.edu WWW: www.stat.ohio-state.edu _________________________________________________________ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-...

...al error: Command failed for target `test-Recommended-Examples' Current working directory /home/gardar/local/src/R-1.6.0/tests *** Error code 1 make: Fatal error: Command failed for target `fullcheck' -- _________________________________________________________ Gardar Johannesson Department of Statistics The Ohio State University 304E Cockins Hall, 1958 Neil Ave. Columbus, OH 43210 Email: gardar@stat.ohio-state.edu Tel: (614) 292-1567 Web: www.stat.ohio-state.edu/~gardar Fax: (614) 292-2096 _________________________________________________________ -.-...

...C="cc" CFLAGS="-xO5 -xlibmil -dalign" F77="f95" FFLAGS="-xO5 -xlibmil -dalign" CXX="CC" CXXFLAGS="-xO5 -xlibmil -dalign" and I'm using the solaris make program... -- _________________________________________________________ Gardar Johannesson Department of Statistics The Ohio State University 304E Cockins Hall, 1958 Neil Ave. Columbus, OH 43210 Email: gardar@stat.ohio-state.edu Tel: (614) 292-1567 Web: www.stat.ohio-state.edu/~gardar Fax: (614) 292-2096 _________________________________________________________ -.-...

Dear list, I have problems installing R-2.0.1 on SUSE Linux 9.2. I used the following commands in order install R in /usr/local ./configure --with x11 --with-readline make make install When starting R and trying to display a plot on the X-window system output is written to a postscript file. When I try to run x11 with >x11() Error in X11(): X11 is not available. I do have a running

Hello, I am doing mcmc=10000 simulations from a posterior distribution of the parameters of a mixture of K=6 normal densities. I have mcmc by K matrices simMeans, simVars and simWeights containing the simulation output: one row for each simulation, one column for each normal component of the mixture. One thing I would like to do is a plot of the posterior predictive density. In order to do that

...se). We do plan to have a version of this for all platforms in due course. ################## By the way; is it 'required' to write a summary of responses and post to r-help? (e.g., as on the s-news list.) Thanks, Gardar _________________________________________________________ Gardar Johannesson Home Addr. Department of Statistics 605 Dennison, #3 Ohio State University Columbus, OH 43215 305A Cockins Hall, 1958 Neil Av. Tel: 614-531-0102 Columbus, OH 43210 ( cellular ) Tel: 614-292-6038 Fax: 614-292-2096 e-mail: gardar a...

R 1.6.0 has gone into final feature freeze as of today. As a new feature, we'll make interim beta versions available via ftp://cran.us.r-project.org/pub/R/src/base alias http://cran.us.r-project.org/src/base (filename R-1.6.0beta_*.tar.gz, where * is the creation date). If you want to help ensure that the final 1.6.0 works satisfactorily on *your* platform, it might be a good idea to