search for: johannesradinger

Hi, I am using colsplit (package = reshape) to split all strings in a column according to the same patterns. Here an example: library(reshape2) df1 <- data.frame(x=c("str1_name2", "str3_name5")) df2 <- data.frame(df1, colsplit(df1$x, pattern = "_", names=c("str","name"))) This is nearly what I want but I want to remove the words

Hi, I've got a dataframe having a code as column name. Addtionally I have another dataframe with a two columns (and lots of rows), the first containing the code and the second some Text (real name). Now I'd like to use the information (pairs of code and name) of the second dataframe to rename all the columnnames in the first dataframe. How is it possible to achieve that? Here a small

Hi, I would like to split dataframe based on one colum and want to connect the two dataframes by rows (like rbind). Here a small example: # The orgininal dataframe df1 <- data.frame(col1 = c("A","A","B","B"),col2 = c(1:4), col3 = c(1:4)) # The datafame how it could look like df2 <- data.frame(A.col2 = c(1,2), A.col3 = c(1,2), B.col2 = c(3,4), B.col3

Hi, I have a vector of strings like: c("a1b1","a2b2","a1b2") which I want to spilt into two parts like: c("a1","a2","a2") and c("b1","b2,"b2"). So there is always a first part with a+number and a second part with b+number. Unfortunately there is no separator I could use to directly split the vectors.. Any idea

Hi, is there a way to color the branches or text label of the branches of dendrograms e.g. from hclust() according to a grouping variable. Here I have something in mind like: http://www.sigmaaldrich.com/content/dam/sigma-aldrich/life-science/biowire/biowire-fall-2010/proteome-figure-1.Par.0001.Image.gif (ectodermal, endodermal, mesodermal). /johannes

Hi, I'd like to get mean values for the margins of my casted data.frame. For the casting I am using dcast() from reshape2. However, when I set the margins parameter (margins=c("grand\_row")) I get following error concerning an unrecognized escape character '\_'. So what is the correct command to get the outermost margins only in reshape2? /johannes [[alternative HTML

Hi, I am trying to calculated various summary statistics using the dcast function of reshape2. This works perfectly for getting the mean, sum, length, sd. But when I want to calculate the median I get an error. I tried it with and without removing NAs: my_median <- function(x) median(x, na.rm = FALSE) median_df <- dcast(patch_stats_dfm,formula=species~input+barriers,my_median) Error in

Hi, I'd like to use Latin Hypercube Sampling (LHC) in the the context of uncertainty / sensitivity analysis of a complex model with approximately 10 input variables. With the LHC approach I'd like to generate parameter combinations for my model input variables. Therefore I came across an simple example here on the mailing list (

Hi, I have a dataframe with multiple (appr. 20) columns containing vectors of different values (different distributions). Now I'd like to create a crosstable where I compare the distribution of each vector (df-column) with each other. For the comparison I want to use the ks.test(). The result should contain as row and column names the column names of the input dataframe and the cells should

Hi, I'd like to merge mutliple dataframes from a list of dataframes by some common columns. The approach for simply merging 2 dataframes is working with: merge(df1,df2,by=c("col1","col2","col3"),all=TRUE) For mutliple dataframes in a list I try to use the merge_all command from the package reshape. The documentation states that the command takes a list of

Hi, I already found a conversation on the integration of a normal distribution and two suggested solutions (https://stat.ethz.ch/pipermail/r-help/2007-January/124008.html): 1) integrate(dnorm, 0,1, mean = 0, sd = 1.2) and 2) pnorm(1, mean = 0, sd = 1.2) - pnorm(0, mean = 0, sd = 1.2) where the pnorm-approach is supposed to be faster and with higher precision. I want to integrate a mixed