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...ks a lot, Ulrich ------------------------------------------------------------------------ *Dr. Ulrich Bodenhofer* Associate Professor Institute of Bioinformatics *Johannes Kepler University* Altenberger Str. 69 4040 Linz, Austria Tel. +43 732 2468 4526 Fax +43 732 2468 4539 bodenhofer at bioinf.jku.at <mailto:bodenhofer at bioinf.jku.at> http://www.bioinf.jku.at/ <http://www.bioinf.jku.at>

...he warning that argument y is present in the code but missing in the documentation , although it is actually NOT in the code. In order to make this reproducible for everybody, I put together a little dummy package in which one of the methods leads to exactly this warning: http://www.bioinf.jku.at/people/bodenhofer/codocMismatchTest_0.0.1.tar.gz Just run 'R CMD check' on this archive and you'll see. You will also see from the code and the corresponding documentation that the warning seems unjustified. I tried the following R versions: 2.12.1, 2.13.0, 2.13.1, 2.14.0, 2.14.1...

...ropagation in fulfillment of multiple users requests. It should now be much easier to cluster large data sets. Apart from this extension, the interfaces to apcluster() and related functions have been made more comfortable and flexible. For more details, see the following URLs: http://www.bioinf.jku.at/software/apcluster/ <http://www.bioinf.jku.at/software/apcluster/> http://cran.r-project.org/web/packages/apcluster/index.html <http://cran.r-project.org/web/packages/apcluster/index.html> Best regards, Ulrich ---------------------------------------------------------------------...

------------------------------------------------------------------------------------------------ CALL FOR PAPERS 15th International Conference on Managed Languages & Runtimes (ManLang'18) September 10-14, 2018, Linz, Austria http://ssw.jku.at/manlang18/ ------------------------------------------------------------------------------------------------ ManLang (formerly PPPJ) is a premier forum for presenting and discussing novel results in all aspects of managed programming languages and runtime systems, which serve as building block...

Hello, I have a dataset with proportions that vary around a fixed mean, is it possible to use betareg to look at variance in the dispersion parameter while keeping the mean fixed? I am very new to R but have tried the following: svec<-c(qlogis(mean(data1$scaled)),0,0,0) f<-betareg(scaled~-1 | expt_label + grouped_hpi, data=data1, link.phi="log",

...rote: > ------------------------------------------------------------------------------------------------ > > CALL FOR PAPERS > > 15th International Conference on Managed Languages & Runtimes > (ManLang'18) > > September 10-14, 2018, Linz, Austria > > http://ssw.jku.at/manlang18/ > > ------------------------------------------------------------------------------------------------ > > ManLang (formerly PPPJ) is a premier forum for presenting and discussing > novel results in all aspects of managed programming languages and > runtime systems, wh...

...someone >> else has a more creative solution, but any sort of conditional/dynamic >> approach would probably be too problematic in comparison. >> >> Michael >> >> >> >> On Wed, Mar 26, 2014 at 4:26 AM, Ulrich Bodenhofer < >> bodenhofer@bioinf.jku.at >> > wrote: >> >> > [cross-posted to R-devel and bioc-devel] >> > >> > Hi, >> > >> > I am trying to implement a 'sort' method in one of the CRAN packages I >> am >> > maintaining ('apcluster'). I started w...

Hi, I have a dataset that looks like the one below. data plot plantno. species H 31 ABC D 2 DEF Y 54 GFE E 12 ERF Y 98 FVD H 4 JKU J 7 JFG A 55 EGD . . . . . . . . . I want to select rows belonging to 7 random plots for 100 times. (There are 50 plots in total) So I created a list of 100 vectors, each v...

...include the list, sorry. I'm including r-package-devel too this time, as it seems more appropriate for this list. El 22 ene. 2018 10:11, "I?aki ?car" <i.ucar86 at gmail.com> escribi?: > > > El 22 ene. 2018 8:12, "Ulrich Bodenhofer" <bodenhofer at bioinf.jku.at> > escribi?: > > Dear colleagues, dear members of the R Core Team, > > This was an issue raised by Prof. Brian Ripley and sent privately to all > developers of CRAN packages that suggest Bioconductor packages (see > original message below). As mentioned in my message encl...

...gt; list. >> >> >> El 22 ene. 2018 10:11, "I?aki ?car" <i.ucar86 at gmail.com >> <mailto:i.ucar86 at gmail.com>> escribi?: >> >> >> >> ??? El 22 ene. 2018 8:12, "Ulrich Bodenhofer" >> ??? <bodenhofer at bioinf.jku.at <mailto:bodenhofer at bioinf.jku.at>> >> escribi?: >> >> ??????? Dear colleagues, dear members of the R Core Team, >> >> ??????? This was an issue raised by Prof. Brian Ripley and sent >> ??????? privately to all developers of CRAN packages that sugg...

Dear colleagues, This is to inform you that Version 1.3.1 of the R package apcluster has been released on CRAN. We did a major improvement of heatmap and dendrogram plotting, as well as several minor improvements of the package. For more details, see the following URLs: http://www.bioinf.jku.at/software/apcluster/ http://cran.r-project.org/web/packages/apcluster/index.html Best regards, Ulrich ------------------------------------------------------------------------ *Dr. Ulrich Bodenhofer* Associate Professor Institute of Bioinformatics *Johannes Kepler University* Altenberger Str....

...t seems more appropriate for this > list. > > > El 22 ene. 2018 10:11, "I?aki ?car" <i.ucar86 at gmail.com > <mailto:i.ucar86 at gmail.com>> escribi?: > > > > El 22 ene. 2018 8:12, "Ulrich Bodenhofer" > <bodenhofer at bioinf.jku.at <mailto:bodenhofer at bioinf.jku.at>> escribi?: > > Dear colleagues, dear members of the R Core Team, > > This was an issue raised by Prof. Brian Ripley and sent > privately to all developers of CRAN packages that suggest > Bioconductor...

...but any sort of >> conditional/dynamic >> approach would probably be too problematic in comparison. >> >> Michael >> >> >> >> On Wed, Mar 26, 2014 at 4:26 AM, Ulrich Bodenhofer >> <bodenhofer at bioinf.jku.at <mailto:bodenhofer at bioinf.jku.at> >> > wrote: >> >> > [cross-posted to R-devel and bioc-devel] >> > >> > Hi, >> > >> > I am trying to implement a 'sort' method in one of t...

...lrich Bodenhofer ------------------------------------------------------------------------ *Dr. Ulrich Bodenhofer* Associate Professor Institute of Bioinformatics *Johannes Kepler University* Altenberger Str. 69 4040 Linz, Austria Tel. +43 732 2468 4526 Fax +43 732 2468 4539 bodenhofer at bioinf.jku.at http://www.bioinf.jku.at/

I am using 'tm' package for text mining and facing an issue with finding the frequently occuring terms. From the definition it appears that findFreqTerms and minDocFreq are equivalent commands and both tries to identify the documents with terms appearing more than a specified threshold. However, I am getting drastically different results with both. I have given the results from both the

Problem on flexmix when trying to apply signature developed in one model to a new sample. Dear R Users, R Core Team, I have a problem when trying to know the classification of the tested cases using two variables with the function of flexmix: After importing the database and creating a matrix: BM<-cbind(Data$var1,Data$var2) I see that the best model has 2 groups and use: ex2

...else has a more creative solution, but any sort of > conditional/dynamic > approach would probably be too problematic in comparison. > > Michael > > > > On Wed, Mar 26, 2014 at 4:26 AM, Ulrich Bodenhofer > <bodenhofer at bioinf.jku.at <mailto:bodenhofer at bioinf.jku.at> > > wrote: > > > [cross-posted to R-devel and bioc-devel] > > > > Hi, > > > > I am trying to implement a 'sort' method in one of the CRAN > package...

...%20c%2B%2B%20target+page:1+mid:lv2v272mi6njzx5m+state:results) and from the date it would probably fit in with my mental records as being the last time the request was posted. For this very reason I actually started using things like Spirit ( http://spirit.sourceforge.net/), and Coco/R (http://ssw.jku.at/coco/) rather than ANTLR as my parser generation tool when I needed something that worked well with C++. I take it though that the main reason you are thinking about using ANTLR is because of the availability of a pretty good, and existing C++ grammar? Granville PS. I strongly advise you to p...

That sounds like a problem. Just so I understand, do you mean there isn't the run-time support etc. to write back ends for the C++ language, or that the compiler IR is also somehow insufficient to write a code generator? --Vikram Associate Professor, Computer Science University of Illinois at Urbana-Champaign http://llvm.org/~vadve On Jul 11, 2009, at 3:00 PM, Granville Barnett

i have just rebuilt glibc package with this option CFLAGS="-g $OPTIMIZ -mno-tls-direct-seg-refs" \ as suggested on this page http://www.pervasive.jku.at/About_Us/Staff/Hochreiter/Server_Virtualization/ but its failed i have only installed the glibc-2.5-i486-4.tgz afterwards thats all it says. I still get tls warnings. I''m pretty sure i have followed everything correctly according to those instructions although i am going to do it...