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2020 Sep 09
3
more Matrix weirdness
...but got auto rejected. Ideally you would reduce the test timing so that the overall check time is less than 10 min . Best, Uwe Ligges ------------------------------ Message: 22 Date: Wed, 9 Sep 2020 16:48:40 +1000 From: Hugh Parsonage <hugh.parsonage at gmail.com> To: Jeroen Ooms <jeroenooms at gmail.com> Cc: Tomas Kalibera <tomas.kalibera at gmail.com>, Luke Tierney <luke-tierney at uiowa.edu>, R-devel <r-devel at r-project.org>, Martin Maechler <maechler at stat.math.ethz.ch> Subject: Re: [Rd] [External] Re: Operations with long altrep vectors cause se...
2020 Sep 10
0
more Matrix weirdness
...test timing so that the overall check time is less > than 10 min . > Best, Uwe Ligges > ------------------------------ > Message: 22 Date: Wed, 9 Sep 2020 16:48:40 +1000 From: > Hugh Parsonage <hugh.parsonage at gmail.com> To: Jeroen Ooms > <jeroenooms at gmail.com> Cc: Tomas Kalibera > <tomas.kalibera at gmail.com>, Luke Tierney > <luke-tierney at uiowa.edu>, R-devel <r-devel at r-project.org>, > Martin Maechler <maechler at stat.math.ethz.ch> Subject: Re: > [Rd] [External] Re: Operations w...
2015 Apr 15
4
RObjectTables freezes in R 3.2.0 RC on 32bit systems
...it does not appear on x64 and because the official R interface to this functionality, the RObjectTables package from OmegaHat, is no longer maintained. I created a slightly updated version of RObjectTables package (added a NAMESPACE file) to reproduce the problem: devtools::install_github("jeroenooms/RObjectTables") The problem can be triggered using the included example from the DirectoryObjectTable manual. library(RObjectTables) db <- DirectoryObjectTable(tempdir()) dbwrite(db, "x", 1:10) dbwrite(db, "y", letters[1:3]) dbobjects(db) dbread(db, "...
2015 Jan 08
2
Testing R packages on Solaris Studio
...'-library=sunperf' --with-lapack All works great (fast too), except for some CRAN packages with c++ code won't build. The compiler itself works, most packages (including e.g. MCMCpack) build OK. However packages like Rcpp and RJSONIO fail with errors shown here: https://gist.github.com/jeroenooms/f1b6a172320a32f59c82. I tried installing with GNU make, but that does not seem to be the problem configure.vars = "MAKE=/opt/csw/bin/gmake" I am aware that I can work around it by compiling with gcc instead of solaris studio, but I would specifically like to replicate the setup from...
2009 Nov 03
1
multivariate numerical integration.
...removed from CRAN (It is still referred to in the help file for integrate(stats) though). I assume it has been deprecated for a reason? Is there an alternative for multivariate numerical integration? ----- Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://old.nabble.com/multivariate-numerical-integration.-tp26164395p26164395.html Sent from the R help mailing list archive at Nabble.com.
2009 Sep 05
2
Anova over a list of models
...nt, i.e. anova(model1,model2). I run into two problems: 1) anova(myModels[1],myModels[2]) returns an error. 2) if n, the number of models, is unknown, how do I add all models as a seperate argument? ----- Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/Anova-over-a-list-of-models-tp25311985p25311985.html Sent from the R help mailing list archive at Nabble.com.
2009 Aug 12
1
Problem Installing R 2.9.1.1 RHEL x86_64 binary
...-1.el5.x86_64.rpm error: Failed dependencies: R-core = 2.9.1-1.el5 is needed by R-devel-2.9.1-1.el5.x86_64 pcre-devel is needed by R-devel-2.9.1-1.el5.x86_64 What could be the problem? ----- Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/Problem-Installing-R-2.9.1.1-RHEL-x86_64-binary-tp24931890p24931890.html Sent from the R help mailing list archive at Nabble.com.
2009 Sep 05
1
Convert dataframe to array of records
...does not require that every element is of the same datatype. Is there an easy way (ie avoid for-loops etc) to convert the dataframe to an array of records, while keeping the datatypes for every field? ----- Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/Convert-dataframe-to-array-of-records-tp25310023p25310023.html Sent from the R help mailing list archive at Nabble.com.
2020 Sep 08
4
[External] Re: Operations with long altrep vectors cause segfaults on Windows
On Tue, Sep 8, 2020 at 11:44 PM Jeroen Ooms <jeroenooms at gmail.com> wrote: > > On Tue, Sep 8, 2020 at 5:20 PM Tomas Kalibera <tomas.kalibera at gmail.com> wrote: > > > > On 9/8/20 4:48 PM, Hugh Parsonage wrote: > > > Unfortunately I only get > > > > > > [Thread 21752.0x4aa8 exited with code 322122...
2009 Nov 03
2
1 dimensional optimization with local minima
...being an optimization expert, I could use some advice. What could be an appropriate package or function for one-dimensional bounded optimization, that includes some protection against local minima? ----- Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://old.nabble.com/1-dimensional-optimization-with-local-minima-tp26160001p26160001.html Sent from the R help mailing list archive at Nabble.com.
2009 Sep 06
3
[Hmisc] Latex to pdf
...metry/geometry.cfg)) No file file643c9869.aux. [1] (./file643c9869.aux) ) Output written on file643c9869.dvi (1 page, 372 bytes). Transcript written on file643c9869.log. Error: Can't open display: ----- Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/-Hmisc--Latex-to-pdf-tp25316986p25316986.html Sent from the R help mailing list archive at Nabble.com.
2020 Sep 09
2
[External] Re: Operations with long altrep vectors cause segfaults on Windows
...w-FAQ (R for Windows FAQ), but yes, it is harder than on Linux. We can take care of this report, but of course in the longer term it would help if more people could take their time to setup debugging and analyze bugs even on Windows. Tomas > > On Wed, 9 Sep 2020 at 07:47, Jeroen Ooms <jeroenooms at gmail.com> wrote: >> On Tue, Sep 8, 2020 at 11:44 PM Jeroen Ooms <jeroenooms at gmail.com> wrote: >>> On Tue, Sep 8, 2020 at 5:20 PM Tomas Kalibera <tomas.kalibera at gmail.com> wrote: >>>> On 9/8/20 4:48 PM, Hugh Parsonage wrote: >>>>> U...
2018 Feb 13
2
Setting the path to Rtools for package compilation on Windows
On Tue, Feb 13, 2018 at 2:20 AM, Jeroen Ooms <jeroenooms at gmail.com> wrote: > Thanks for your question. Your logs show that 'gcc' is not found. As > of R 3.3 you need to set the path to the compiler using the BINPREF > variable. This is because we ship two separate versions of gcc, one > targeting win32 and one targeting win64....
2016 Sep 15
1
Finalizer execution order question
...refore the handles have destroyed themselves before I can properly take hem out of the pool. This is exactly what I was trying to prevent by putting the handles in a 'prot' list. I wrote a simple package [1] that illustrates this issue. To run the example: devtools::install_github("jeroenooms/test") library(test) pool <- make_pool() show_handles(pool) rm(pool) gc() What this example is supposed to illustrate is that even though 'prot' gets protected from GC while the externalptr is around, the finalizers in 'prot' have already executed when the extern...
2017 Mar 27
1
Hyperbolic tangent different results on Windows and Mac
For future reference: https://sourceforge.net/p/mingw-w64/mailman/message/35747206/ On Wed, Mar 22, 2017 at 2:12 PM, Jeroen Ooms <jeroenooms at gmail.com> wrote: > This looks like a bug in mingw-w64 CRT. The problem can be produced > with C++ without R: > > #include <iostream> > #include <cmath> > #include <complex> > > int main(){ > std::cout << std::fixed; > std...
2020 Sep 09
2
[External] Re: Operations with long altrep vectors cause segfaults on Windows
...arder than on Linux. We can take care of this report, but of course in >> the longer term it would help if more people could take their time to >> setup debugging and analyze bugs even on Windows. >> >> Tomas >> >>> On Wed, 9 Sep 2020 at 07:47, Jeroen Ooms <jeroenooms at gmail.com> wrote: >>>> On Tue, Sep 8, 2020 at 11:44 PM Jeroen Ooms <jeroenooms at gmail.com> wrote: >>>>> On Tue, Sep 8, 2020 at 5:20 PM Tomas Kalibera <tomas.kalibera at gmail.com> wrote: >>>>>> On 9/8/20 4:48 PM, Hugh Parsonage wrote...
2009 Feb 28
1
lme4 and Variable level detection
...39;m confused. Is there a fundamental difference between a crosslevel interaction, or is the same thing as a regular interaction when the model also holds an error term for the lower level variable? ----- Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/lme4-and-Variable-level-detection-tp22262944p22262944.html Sent from the R help mailing list archive at Nabble.com.
2015 Sep 14
3
Optimization bug when byte compiling with gcc 5.2.0 on windows
...mize = 2L))(x) # [1] NA compiler::cmpfun(mysd, list(optimize = 3L))(x) # [1] NaN The problem does not appear with gcc 5.2.0 on Debian, and also not with gcc 4.9.3 on Windows. Where do I start debugging this? The disassembled output from the compiled functions is here: https://gist.github.com/jeroenooms/3206945a6db6680a9c5c
2009 Mar 07
10
popular R packages
...l. Are there any statistics available on which R packages are downloaded often, or is there something like a package-survey? Something similar to http://popcon.debian.org/ maybe? Any tips are welcome! ----- Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/popular-R-packages-tp22391260p22391260.html Sent from the R help mailing list archive at Nabble.com.
2020 Jun 07
5
use of the tcltk package crashes R 4.0.1 for Windows
...ELT(avec, i))) objv[objc++] = (Tcl_Obj *) R_ExternalPtrAddr(t); } and I can't see how tmp can be NULL at the free(), nor can I see it mattering if it is not set to NULL (notice that it goes out of scope with the for loop). -pd > On 7 Jun 2020, at 16:00 , Jeroen Ooms <jeroenooms at gmail.com> wrote: > > On Sun, Jun 7, 2020 at 3:13 AM Fox, John <jfox at mcmaster.ca> wrote: >> >> Hi, >> >> The following code, from the examples in ?TkWidgets , immediately crashes R 4.0.1 for Windows: >> >> --------------------- snip ----...