search for: javaconf

...encoding) : cannot open file '.../etc/Rprofile.site': No such file or directory Execution halted where the dots ... specify the path to the build-R folder where R-devel was built. And I check the etc folder and indeed there is no the Rprofile.site -rw-r--r-- 1 iago iago 209 Nov 9 08:27 javaconf -rw-r--r-- 1 iago iago 770 Nov 9 08:35 ldpaths -rw-r--r-- 1 iago iago 6672 Nov 9 08:35 Makeconf -rw-r--r-- 1 iago iago 3336 Nov 9 08:27 Makefile -rw-r--r-- 1 iago iago 1853 Nov 9 08:27 Renviron -rw-r--r-- 1 iago iago 1173 Nov 9 08:32 repositories I note that make install installed R in the p...

....0_23" OpenJDK Runtime Environment (IcedTea6 1.11pre) (6b23~pre11-0ubuntu1.11.10.1) OpenJDK Client VM (build 20.0-b11, mixed mode, sharing) ======================================= I have re-run "R CMD javareconf" as root. Does the R CMC javareconf need something added? (i.e. R CMD javaconf xxx) Do I really need a Java Development Kit installed? ============================================ sessionInfo() R version 2.13.1 (2011-07-08) Platform: i686-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_U...

...nnot open file '.../etc/Rprofile.site': No such file or directory >Execution halted > >where the dots ... specify the path to the build-R folder where R-devel was built. And I check the etc folder and indeed there is no the Rprofile.site >-rw-r--r-- 1 iago iago 209 Nov 9 08:27 javaconf >-rw-r--r-- 1 iago iago 770 Nov 9 08:35 ldpaths >-rw-r--r-- 1 iago iago 6672 Nov 9 08:35 Makeconf >-rw-r--r-- 1 iago iago 3336 Nov 9 08:27 Makefile >-rw-r--r-- 1 iago iago 1853 Nov 9 08:27 Renviron >-rw-r--r-- 1 iago iago 1173 Nov 9 08:32 repositories > >I note that make...

...nnot open file '.../etc/Rprofile.site': No such file or directory >Execution halted > >where the dots ... specify the path to the build-R folder where R-devel was built. And I check the etc folder and indeed there is no the Rprofile.site >-rw-r--r-- 1 iago iago 209 Nov 9 08:27 javaconf >-rw-r--r-- 1 iago iago 770 Nov 9 08:35 ldpaths >-rw-r--r-- 1 iago iago 6672 Nov 9 08:35 Makeconf >-rw-r--r-- 1 iago iago 3336 Nov 9 08:27 Makefile >-rw-r--r-- 1 iago iago 1853 Nov 9 08:27 Renviron >-rw-r--r-- 1 iago iago 1173 Nov 9 08:32 repositories > >I note that make...

...think the problem is with the r-devel PKGBUILD file, rather than anything wrong in R itself. The PKGBUILD file does this: ln -s /etc/R/${i} ${i} when it should do ln -s /etc/R-devel/${i} ${i} You can fix your installed version with cd /opt/r-devel/lib/R/etc/ sudo rm ./* sudo ln -s /etc/R-devel/javaconf sudo ln -s /etc/R-devel/ldpaths sudo ln -s /etc/R-devel/Makeconf sudo ln -s /etc/R-devel/Renviron sudo ln -s /etc/R-devel/repositories Or (better) fix the PKGBUILD and makepkg/pacman -U Best, Ista On Wed, Apr 19, 2017 at 10:32 AM, Angerer, Philipp via R-devel <r-devel at r-project.org> w...

Hi Dirk and Martyn, > That looks fine. Can you please give a reproducible example of a package > that compiles correctly on R 3.3.3 but not with R 3.4.0 or R-devel. here you go, it?s pretty much the simplest package possible that needs C++11: https://github.com/flying-sheep/cxx11test > Maybe you can share with us how you configure the build of R-devel? Sure, in the mail you quoted, I

...E or similar environment variable ? Does env | grep '^R_' give a hint? >> where the dots ... specify the path to the build-R folder where R-devel was built. And I check the etc folder and indeed there is no the Rprofile.site >> -rw-r--r-- 1 iago iago 209 Nov 9 08:27 javaconf >> -rw-r--r-- 1 iago iago 770 Nov 9 08:35 ldpaths >> -rw-r--r-- 1 iago iago 6672 Nov 9 08:35 Makeconf >> -rw-r--r-- 1 iago iago 3336 Nov 9 08:27 Makefile >> -rw-r--r-- 1 iago iago 1853 Nov 9 08:27 Renviron >> -rw-r--r-- 1 iago iago 1173 Nov 9...

...E or similar environment variable ? Does env | grep '^R_' give a hint? >> where the dots ... specify the path to the build-R folder where R-devel was built. And I check the etc folder and indeed there is no the Rprofile.site >> -rw-r--r-- 1 iago iago 209 Nov 9 08:27 javaconf >> -rw-r--r-- 1 iago iago 770 Nov 9 08:35 ldpaths >> -rw-r--r-- 1 iago iago 6672 Nov 9 08:35 Makeconf >> -rw-r--r-- 1 iago iago 3336 Nov 9 08:27 Makefile >> -rw-r--r-- 1 iago iago 1853 Nov 9 08:27 Renviron >> -rw-r--r-- 1 iago iago 1173 Nov 9...

...o R CMD javareconf has been enhanced to be more similar to the code used by configure. There is now a test that a JNI program can be compiled (like configure did) and only working settings are used. It makes use of custom settings from configuration recorded in etc/javaconf. o The --no-vignettes argument of R CMD build has been renamed to the more accurate --no-build-vignettes: its action has always been to (re)build vignettes and never omitted them. R CMD check accepts --no-build-vignettes as a preferred synonym for --no-rebuild-vignette...

...o R CMD javareconf has been enhanced to be more similar to the code used by configure. There is now a test that a JNI program can be compiled (like configure did) and only working settings are used. It makes use of custom settings from configuration recorded in etc/javaconf. o The --no-vignettes argument of R CMD build has been renamed to the more accurate --no-build-vignettes: its action has always been to (re)build vignettes and never omitted them. R CMD check accepts --no-build-vignettes as a preferred synonym for --no-rebuild-vignette...