search for: java_ld_library_path

...ter command JAVAC Java compiler command JAVAH Java header and stub generator command JAVA_HOME path to the home of Java distribution JAVA_LIBS flags needed for linking against Java libraries JAVA_CPPFLAGS C preprocessor flags needed for compiling JNI programs JAVA_LD_LIBRARY_PATH is defined in Makeconf, but not exported. Specifically, src/scripts/config includes the following line: ok_java_vars="JAVA JAVAC JAVAH JAR JAVA_HOME JAVA_LIBS JAVA_CPPFLAGS" This list does not include JAVA_LD_LIBRARY_PATH, with no explanation of why not. Providing this env variable wou...

attempting to install rJava on R-2.7.0, x86_64 platform, config.log shows the following error: configure:3880: checking whether JNI programs can be compiled configure:3898: gcc -m64 -std=gnu99 -o conftest -g -O2 -I/path/to/x86-64-linux/jdk-1.6.0_06/jre/../include conftest.c -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64/server -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

...re/../bin/javah Java archive tool: /usr/bin/jar Java library path: /usr/lib/../lib/gcj-4.3-90:/usr/lib/jni JNI linker flags : -L/usr/lib/../lib/gcj-4.3-90 -L/usr/lib/jni -ljvm JNI cpp flags : The following Java variables have been exported: JAVA_HOME JAVA JAVAC JAVAH JAR JAVA_LIBS JAVA_CPPFLAGS JAVA_LD_LIBRARY_PATH > sessionInfo() R version 2.9.1 (2009-06-26) x86_64-unknown-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATI...

.../i386:/lib:/usr/lib JNI linker flags : -L$(JAVA_HOME)/lib/i386/server -L$(JAVA_HOME)/lib/i386 -L$(JAVA_HOME)/../lib/i386 -L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -ljvm JNI cpp flags : The following Java variables have been exported: JAVA_HOME JAVA JAVAC JAVAH JAR JAVA_LIBS JAVA_CPPFLAGS JAVA_LD_LIBRARY_PATH Runnig: /bin/bash [user at penguins1lanalt java]$ ls /usr/java default jdk1.6.0_25 jre1.6.0_30 latest / Help please? -- View this message in context: http://r.789695.n4.nabble.com/rJava-RCMD-javareconf-fails-tp4488961p4488961.html Sent from the R help mailing list archive at Nabble.com.

Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o

Before I do that, I would need to remove the gcj stuff that are in /usr/bin. If I know how to remove gcj, I'd gladly do that. However, for the particular version of the OS, the entire GCC seems to be bundled into one rpm, and I could not remove just the gcj component. Neither do I wish to mess with files that are part of some RPMs--- in my experience that's invitation for trouble later.

Hi, I would like to test the new package RGG (R Gui Generator). This package requires the installation of several other package. One of them is rJava. I installed sun-java6-jdk and run the R CMD javareconf but the installation still fails ! Do you have any ideas ? * Installing *source* package ‘rJava’ ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file

...)jre/lib/amd64 -L$(JAVA_HOME)jre/../lib/amd64 -L -L/usr/java/packages/lib/amd64 -L/usr/lib64 -L/lib64 -L/lib -L/usr/lib -ljvm JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux The following Java variables have been exported: JAVA_HOME JAVA JAVAC JAVAH JAR JAVA_LIBS JAVA_CPPFLAGS JAVA_LD_LIBRARY_PATH And the installation halts with the following error (please see below for the details): rJava.h:19:17: error: jni.h: No such file or directory I would appreciate very much your kindly help Servet install.packages("rJava",dep=T) Installing package(s) into ?/home/acizmeli/R/x86_64-re...

...#39;${INSTALL}' INSTOBJEXT='' INTLBISON='' INTLLIBS='' INTLOBJS='' INTL_LIBTOOL_SUFFIX_PREFIX='' INTL_MACOSX_LIBS='' JAR='' JAVA='' JAVAC14='' JAVAC='' JAVAH='' JAVA_CPPFLAGS0='' JAVA_HOME='' JAVA_LD_LIBRARY_PATH='' JAVA_LIBS0='' LAPACK_LDFLAGS='' LAPACK_LIBS='' LATEX='false' LD='' LDFLAGS='-L/usr/local/lib64' LIBICONV='' LIBINTL='' LIBM='' LIBMULTITHREAD='' LIBOBJS='' LIBPTH='' LIBR='' LIBR_LDFLA...

...9;t need to provide their own Java detection. Newly added make variables are JAVAC, JAVAH, JAR and JAVA_CPPFLAGS. R CMD javareconf was updated to look for the corresponding Java tools as well. In addition, Java detection honors user-supplied environment variables JAVA_CPPFLAGS, JAVA_LIBS and JAVA_LD_LIBRARY_PATH. o Added workaround for reported non-POSIX sh on OSF1. (PR#9375) o 'make install-strip' now works, stripping the executables and also the shared libraries and modules on platforms where 'libtool' knows how to do so. o Building R as a shared library and standalone n...

...9;t need to provide their own Java detection. Newly added make variables are JAVAC, JAVAH, JAR and JAVA_CPPFLAGS. R CMD javareconf was updated to look for the corresponding Java tools as well. In addition, Java detection honors user-supplied environment variables JAVA_CPPFLAGS, JAVA_LIBS and JAVA_LD_LIBRARY_PATH. o Added workaround for reported non-POSIX sh on OSF1. (PR#9375) o 'make install-strip' now works, stripping the executables and also the shared libraries and modules on platforms where 'libtool' knows how to do so. o Building R as a shared library and standalone n...