search for: jari

...in dvi file, but that can the package author correct. * I replaced reference to a non-existent function ~~fun~~ with a reference to function help. I'm sorry for the formatting of the diff file: my emacs/ESS is cleverer than I and changes indentation and line breaks against my will. cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland Ph. +358 8 5531526, cell +358 40 5136529, fax +358 8 5531061 email jari.oksanen at oulu.fi, homepage http://cc.oulu.fi/~jarioksa/

...[Matrix.so] Error 1 ERROR: compilation failed for package 'Matrix' ** Removing '/usr/lib/R/library/Matrix' ** Restoring previous '/usr/lib/R/library/Matrix' It seems that someting is missing. Have anybody idea where we can find this missing piece? We have Debian Linux. Jari Haukka

Hello I will be applying MDS (actually Isomap) to make a psychological "concept map" of the similarities between N concepts. I would like to scale to a large number of concepts, however, the resulting N*(N-1) pairwise similarities is prohibitive for a user survey. I'm thinking of giving people random subsets of the pairwise similarities. Does anyone have recommendations for this

...t in glm. There is already code for Stata (http://statistics.open.ac.uk/sccs/stata/aglm.ado), Genstat (http://statistics.open.ac.uk/sccs/genstat%5Csccs.gen), Glim (http://statistics.open.ac.uk/sccs/glim/SCCS.MAC) , and SAS (http://statistics.open.ac.uk/sccs/sas/macro/poisreg.sas). Regards, Jari Haukka

...t count, j; @@ -100,5 +100,7 @@ for(j=0 ; j<nc ; j++) { if(R_FINITE(x[i1]) && R_FINITE(x[i2])) { - dist += fabs(x[i1] - x[i2])/fabs(x[i1] + x[i2]); + sum = fabs(x[i1] + x[i2]); + if (sum > 0.0) + dist += fabs(x[i1] - x[i2])/sum; count++; } Best wishes, Jari Oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland Ph. +358 8 5531526 (job), mobile +358 40 5136529 email jari.oksanen at oulu.fi, homepage http://cc.oulu.fi/~jarioksa/ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read...

...t count, j; @@ -100,5 +100,7 @@ for(j=0 ; j<nc ; j++) { if(R_FINITE(x[i1]) && R_FINITE(x[i2])) { - dist += fabs(x[i1] - x[i2])/fabs(x[i1] + x[i2]); + sum = fabs(x[i1] + x[i2]); + if (sum > 0.0) + dist += fabs(x[i1] - x[i2])/sum; count++; } Best wishes, Jari Oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland Ph. +358 8 5531526 (job), mobile +358 40 5136529 email jari.oksanen at oulu.fi, homepage http://cc.oulu.fi/~jarioksa/ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read...

Package: logcheck-database Version: 1.2.35 Severity: wishlist If it were possible, please add rules to ignore SSH debug level messages like these: Mar 22 18:59:29 cante sshd[5673]: debug2: channel 4: rcvd adjust 66020 Mar 22 18:59:34 cante sshd[5673]: debug2: channel 4: window 32736 sent adjust 32800 Sometimes the SSH need to be run with DEBUG in order to pinpoint connection troubles and

I''m doing a graphics application and need onscreen anti-aliasing for both lines and text. Seems like wxGraphicsContext would do that, is that planned to be ported to wxRuby? Best regards, Jari Williamsson

...changing install.packages() is less hassle than changing utils/R/aqua/GUI.R and all other places (although this looks more natural). This still requires a fix in passing type in update.packages() that B. Ripley already did for R 2.1.1, or setting options(pkgType="mac.binary"). cheers, jari oksanen (*) "Object-oriented programming is an exceptionally bad idea which could only have originated in California." E. Dijkstra On Tue, 2005-05-03 at 16:14 +0100, Prof Brian Ripley wrote: > Binary installs are AFAIK only supported in the GUI, where the default is > as documente...

...ize of a source package. As I have a 56KB modem at home (working at ~5KB file transfer speed in practice) I am really concerned with this aspect as well (it doesn't concern me at all when at work). Is the assumption that users won't have tools to build a pdf from the Sweave source? cheers, jari oksanen -- Jari Oksanen -- Dept Biology, Univ Oulu, 90014 Oulu, Finland Ph. +358 8 5531526, cell +358 40 5136529, fax +358 8 5531061 email jari.oksanen at oulu.fi, homepage http://cc.oulu.fi/~jarioksa/ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing...

..." However, this seems to be a suggestion you cannot refuse. If you suggest packages: (a line from DESCRIPTION): Suggests: MASS, ellipse, rgl, mgcv, akima, lattice This is what happens: $ /tmp/R-alpha/bin/R CMD check vegan * checking for working latex ... OK * using log directory '/home/jarioksa/devel/R/vegan.Rcheck' * using R version 2.2.0, 2005-09-19 * checking for file 'vegan/DESCRIPTION' ... OK * this is package 'vegan' version '1.7-75' ... clip ... * checking package dependencies ... ERROR Packages required but not available: ellipse rgl akima In my...

Dear all, I didn't find any graphical solution in the package "mva" to plot the canonical scores from a CCA (canonical correlation analysis). Does anybody knows how to plot or has anybody already programmed : - the map of the canonical scores, - the graph of the canonical weights, - the correlation circle i.e. the canonical loadings ? Thank you for help ...

Hello, Tech question, I hope this has not been addressed before. I searched help archives and looked for online help but came up empty-handed. My question is: (short version) Is there a RPM-supported version of update.packages() for use with updating package libraries on managed multi-user Linux networks? Details: I put in a request for updating the version of R on one of the hosts on my

Full_Name: Jari Oksanen Version: 2.0.1, 2.1.0 beta (2005-04-17) OS: Linux Submission from: (NULL) (130.231.102.145) If name ends with "and", such as "Roeland Lastname", citation() will chop "and" as a separate word giving "Roel and Lastname". This is the case in the upcomi...

...not give any information or reasoning. Would it be sensible to go back to the old behaviour? I found some Swoven files from R 2.4.0 that still put both parts of the output to the same place. For the sake of Sweave and sink, I'd prefer the one place to be stdout instead of stderr. Best wishes, Jari Oksanen -- Jari Oksanen <jarioksa at cc.oulu.fi>

...aves the remaining area to the panel at the bottom left. I got a problem with this approach, though. When resizing the main window, the wall between the left and right part moves as well (=increasing/decreasing the width of all left-side panels). How do I get it to not resize? Best regards, Jari Williamsson

...works like expected: sol <- princomp(x) all.equal(predict(sol), predict(sol, newdata=x)) ## [1] TRUE I don't have any nifty solution to this -- only checking the 'scale.' attribute and acting accordingly: sc <- if (scale.) attr(x, "scaled:scale") else FALSE Cheers, Jari Oksanen

Hi, I'm trying to find out what threshold of indicator value in labadsv should be used to accept a specie as an indicator one? So far I assumed that indval=0.5 is high enough to avoid any mistakes but it was based only in my intuition. I'd be greatful for any advise best regards Agnieszka

Full_Name: Jari Oksanen Version: R 2.1.0 OS: MacOS 10.3.9 Submission from: (NULL) (130.231.102.145) For various reasons (which need not be expanded here) I have tried to update my long neglected R in MacOS X using handy command line tool update.packages() using readily available binaries of contributed packages...

Have you tried using tools:::package_native_routine_registration_skeleton()? If you don't like its output, you can easily edit its results and still avoid most pitfalls. Cheers, Jari Oksanen ________________________________________ From: R-devel <r-devel-bounces at r-project.org> on behalf of Berend Hasselman <bhh at xs4all.nl> Sent: 10 May 2017 09:48 To: Christophe Dutang Cc: r-devel at r-project.org Subject: Re: [Rd] registering Fortran routines in R packages Chr...