search for: jagla

Again me. I want to plot the numbers on the bars of a barplot. This can be done using hist function when setting the label argument true (i.e. data <- c(1,2,3,4) hist(data, labels=T) When I try this using barplot I get an error: > barplot(summary(data), labels=T) Error in axis(if (horiz) 2 else 1, at = at.l, labels = names.arg, lty = axis.lty, : formal

Sorry for the question, but I really cannot find the right search terms to find an answer.. I have a data frame with strings in some of the columns. I want to know all the rows where the strings in both columns are equal. How do I do this? Thanks, Bernd [[alternative HTML version deleted]]

Hi, I am new to R and couldn't find any information on how to handle my table data that I just read in the way I want to use it.. I read in a table from a file: x <- read.delim("filenam", header=TRUE) one column (x$label) hold the class labels. Another holds some values (x$val). I want to calculate summary statistics for different classes. How would I do this? Thanks, Bernd

Hi there, I am looking for R-packages that can help me visualize properties on nucleotide sequences. I want to display sequences in the 1-100K base range as lines and plot features above and below those lines. Any ideas would be welcome. Thanks, Bernd

Hi there, I want to run an R script on a cluster with qsub. Obviously I don't want to display any X window, but I want use png() or something else to write out images. Unfortunately I get the following error message: > png(filename = " ALL.png", width = 480, height = 480, pointsize = 12, bg = "white", res = NA) Error in X11(paste("png::", filename,

Dear all, I am new in R so please forgive the "dumb" question... I am used to work with Mathematica where it is possible to display a 2D array as a collection of shaded squares. The gray level there represents the value of the array element. It is basically a projection of a 2-dimensional histogram. After a lot of reading I still haven't found that kind of function. I would be

Dear all I have a problem with assigning my own labels to the axis of a plot. I want to substitute the given labels e.g. 1,2,3,... with a vector of values and strings e.g. "12.23", "1.34", "245,5", "Result". B.t.w. how do I rotate these labels so they don't overlap???? I want to use the image function to plot. Thanks for your kind help. Bernd

Hi there, I have something that appears to be a factor called drug: Typeof(drug) => Integer As.numeric(drug) gives a long list Levels(drug) gives a long list, too. Now I want something like the summary function does: I want to count how often each level occurs in the given vector. My problem is that summary gives me a list with counts that is incomplete and adds the

Hi, I would like start R in BATCH mode and submit my own parameters. Or in other words, I would like to specify variables from the command line and execute a script using those. I have been looking at commandArgs and calling R from the command line under bash: R CMD BATCH --no-save --args -filename="$filname" -- r-test.R r-test.Rout The problem here is, if $filename contains

Hi, Someone recently told me that R is not working well with other programs in a clustered environment. I believe we are using gensoft and working in a redhat environment. What was also mentioned was that there are problems when running multiple R instance at the same time. Personally I haven't experienced any of the described difficulties but would like to get your feedback and potentially

Hi, I have a few hundreds files with numerical information of different length but with the same column structure. I use the following code to get summary statistics fplist <- list.files(pattern=".*analysis") for (fp in fplist){ x2 <- read.delim(fp) summary(x2) } Summary gives something like: summary (x2) V1 V2

On December 14th, 2004 David Heinemeier Hansson sent this to the mailing list: I''m seeing a lot of new names on the list. Could we perhaps do a round of introductions? That would also be a great first post, if you haven''t had a chance to contribute yet. The basics should include your name, your organization, your country and city, and the project you''re

Hi there, I am looking for R-packages that can help me visualize properties on nucleotide sequences. I want to display sequences in the 1-100K base range as lines and plot features above and below those lines. Any ideas would be welcome. Thanks, Bernd [[alternative HTML version deleted]]