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2007 Mar 02
0
Dice dissimilarity output and 'phylo' function in R
...s:
NULL
Rooted; includes branch lengths".
So I guess this explains why the consensus function
does not work.
Another thing I noticed in the output from the
'dissimilarity' function is that when I compared the
distances computed in R with that from NTSYS or SAS,
for example dice and jaccard coefficients I realised
that the dice distances are very different while the
jaccard distances are the same with those from these
other softwares.
The codes I used for a small example are shown below:
samptest4<- scan (file = "samp-test4.txt")
samptest4<- matrix(data = sampte...