search for: iupac

Hello, I've been searching for a method for identify outliers for quite some time now. The complication is that I cannot assume that my data is normally distributed nor symmetrical (i.e. some distributions might have one longer tail) so I have not been able to find any good tests. The Walsh's Test (http://www.statistics4u.info/ fundsta...liertest.html#), as I understand assumes that the

Dear List, I tested the example in the reposTools vignette: library(reposTools); Loading required package: tools genRepos("Test Repository", "http://biowww.dfci.harvard.edu/~jgentry/","newRepos"); Error in rep.int(colnames(x), nr) : unimplemented type 'NULL' in 'rep' Could someone help me out with this one? I'd appreciate all help.... I am

Hello, I have successfully installed MDL ISIS Draw 2.5 (a program used in chemistry) under Wine (0.9.12 in Debian). Now, I need to install an addon (AutoNom2000, which is used to give IUPAC names of compounds) for this program. (This addon requires Windows 2000/XP; Wine was configured to "mimic" Windows 98 by default). When I try to run its installer, I get the following: renan@diamond:~$ wine /home/renan/Autonom2000AddIn.exe fixme:win:SetWindowTextA setting text ":...

...) have gained a new argument ambiguous defaulting to FALSE allowing to handle ambiguous bases. If TRUE, ambiguous bases are taken into account so that for instance GGN is translated to Gly in the standard genetic code. o New function amb() to return the list of nucleotide matching a given IUPAC nucleotide symbol. o Function count() has gained a new argument alphabet so that oligopeptides counts are now possible. Thanks to Gabriel Valiente for this suggestion. The functions zscore(), rho() and summary.SeqFastadna() have also an argument alphabet which is forwarded to count(). Be...

...) have gained a new argument ambiguous defaulting to FALSE allowing to handle ambiguous bases. If TRUE, ambiguous bases are taken into account so that for instance GGN is translated to Gly in the standard genetic code. o New function amb() to return the list of nucleotide matching a given IUPAC nucleotide symbol. o Function count() has gained a new argument alphabet so that oligopeptides counts are now possible. Thanks to Gabriel Valiente for this suggestion. The functions zscore(), rho() and summary.SeqFastadna() have also an argument alphabet which is forwarded to count(). Be...

Dear all, Does R has any function/package that can pack and unpack string into bit size? The reason I want to do this in R is that R has much more native statistical function than Perl. Yet the data I need to process is so large that it required me to compress it into smaller unit -> process it -> finally recover them back again into string with new information. In Perl the