Displaying 5 results from an estimated 5 matches for "isoform".
2009 Apr 23
1
Accessing all the first sub-elements of a list of list
Hello,
The 179th and 180th elements of my list of lists look like this:
[[179]]
[[179]]$desc
[1] ">ipi|IPI00646510|IPI00646510.2 ISOFORM P60-HCK OF TYROSINE-PROTEIN
KINASE HCK."
[[179]]$seq
[1]
"MGGRSSCEDPGCPRDEERAPRMGCMKSKFLQVGGNTFSKTETSASPHCPVYVPDPTSTIKPGPNSHNSNTP
GIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLETEE
WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRST
FSTLQELV...
2009 Dec 24
1
Question to use R plot GO pie chart
...38;EN
IPI:IPI00019922.5|SWISS-PROT:Q8N0Y2-1|TREMBL:Q53F81|ENSEMBL:ENSP00000338860;ENSP00000375594|REFSEQ:NP_060807|H-INV:HIT000028861|VEGA:OTTHUMP00000078377
Tax_Id=9606 Gene_Symbol=ZN
IPI:IPI00647423.2|SWISS-PROT:Q8N819-1|REFSEQ:NP_001073870|VEGA:OTTHUMP00000076687
Tax_Id=9606 Gene_Symbol=FLJ40125 Isoform 1 of
IPI:IPI00219000.2|SWISS-PROT:P27658|TREMBL:Q53XI6|ENSEMBL:ENSP00000261037|REFS
IPI:IPI00291878.4|SWISS-PROT:P35247|ENSEMBL:ENSP00000361366|REFSEQ:NP_003010|H-INV:HIT000039466|VEGA:OTTHUMP00000019944
IPI:IPI00013945.1|SWISS-PROT:P07911-1|TREMBL:Q8NHW8|ENSEMBL:ENSP00000306279|RE
IPI:IPI00000634....
2006 Sep 01
3
histograms
I am interested in plotting histograms for the following data
Isoform
Tumor_65_198
Tumor_50_192
Tumor_80_167
Tumor_80_204
Tumor_95_197
Tumor_70_189
Tumor_90_202
Tumor_40_177
Tumor_60_21
Tumor_70_174
Tumor_70_147
Tumor_50_5
ABCC4-2007
1
1
1
6
1
9
10
1
2
0
10
1
ABCC4-2008
5
8
7
5
3
10
5
5
7
3
10
3
ABCC4-2009
0
0
0
0
0
0
0...
2009 Dec 17
2
some help regarding combining columns from different files
Dear all,
Here is my code which am using to combine 5th column from different data
sets.
Here is the function to do my job
genesymbol.append.file <-NULL
gene.column <- NULL
readGeneSymbol <- function(files,genesymbol.column=5){
for(i in fnames){
temp <- read.table(fnames,header=T,sep="\t",stringsAsFactors=F,quote="\"")
2007 Mar 18
1
multcomp
I used the multcomp package sometime back for doing multiple
comparisons. I see that it has been updated and the methods like simint
are no longer supported. When I run the program it prompts to me to use
glht. How do I get the lower and upper conf int and the pValues using
glht? Does anyone have an example?
Thanks ../Murli
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