search for: isoa

...identical genotype. I've tried replacing the 0's with NA, but the isoMDS appears to stop on the first iteration and the stress does not improve: distA # A dist object with 13695 elements, 4 of which == 0 cmdsA <- cmdscale(distA, k=2) distB <- distA distB[which(distB==0)] <- NA isoA <- isoMDS(distB, cmdsA) initial value 21.835691 final value 21.835691 converged The other approach I've tried is replacing the 0's with small numbers. In this case isoMDS does reduce the stress values. min(distA[which(distA>0)]) [1] 0.02325581 distC <- distA distC[which(distC...

...ects-$(basename $(notdir $@)) DIR=$*/ -STATIC = $(addsuffix .o,$(basename $(wildcard $(DIR)/*.[cS]))) +STATIC = $(addsuffix .o,$(basename $(wildcard $(DIR)*.[cS]))) objects-static: $(STATIC) - touch $(DIR)/static.obj + touch $(DIR)static.obj clean: archclean find . -type f -a \( -name \*.[isoa] -o -name \*.l[iso] \) -print0 | xargs -0rt rm -f @@ -139,6 +139,6 @@ bitsize: @echo $(BITSIZE) -ifneq ($(wildcard $(DIR)/.*.d),) -include $(wildcard $(DIR)/.*.d) +ifneq ($(wildcard $(DIR).*.d),) +include $(wildcard $(DIR).*.d) endif

...kefile (working copy) @@ -152,6 +152,13 @@ objects-static: $(STATIC) touch $(DIR)static.obj +install-shared: + $(INSTALL) -d $(DESTDIR)$(SHLIBDIR) + $(INSTALL) -m 0755 klibc-`cat $(SOLIB).hash`.so $(DESTDIR)$(SHLIBDIR) + +install-static: + : + clean: archclean find . -type f -a \( -name \*.[isoa] -o -name \*.l[iso] \) -print0 | xargs -0rt rm -f rm -f *.a *.so *.hash *.syms *.stripped Index: ipconfig/Makefile =================================================================== --- ipconfig/Makefile (revision 1009) +++ ipconfig/Makefile (working copy) @@ -29,6 +29,14 @@ $(LIB): $(OBJS) $...