Displaying 1 result from an estimated 1 matches for "irangeslist".
Did you mean:
rangeslist
2017 Apr 28
1
pairwiseAlignment Improvements
...tance
seq: GAACGAGGACC
> B
8-letter "DNAString" instance
seq: GGACGAGC
> alignment <- pairwiseAlignment(A, B, gapOpening = 0, gapExtension = 1, substitutionMatrix = substitutions)
> alignment at subject@mismatch
IntegerList of length 1
[[1]] 2
> alignment at subject@indel
IRangesList of length 1
[[1]]
IRanges of length 1
start end width
[1] 8 9 2
Lastly, why are functions like insertion, deletion, and indel documented in Numeric Summary Methods? Unlike nchar and score, they are not numerical summaries of the data.
It'd be nice to see this part of Biostrings...