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...is-released-whats-new-and-how-to-upgrade/ . The first thing it did was telling me that it will not update several packages. When it was finished I used the warnings function to have a look at what did not work. See the list below. > warnings() Warning messages: 1: In install.packages(update[instlib == l, "Package"], l, ... : installation of package ?boot? had non-zero exit status 2: In install.packages(update[instlib == l, "Package"], l, ... : installation of package ?cluster? had non-zero exit status 3: In install.packages(update[instlib == l, "Package"], l, ......

Hi! As per Thomas' advice, I upgraded R by using "update.packages()" and got the following warning messages: Warning messages: 1: installation of package 'lmtest' had non-zero exit status in: install.packages(update[, "Package"], instlib, contriburl = contriburl, 2: installation of package 'quadprog' had non-zero exit status in: install.packages(update[, "Package"], instlib, contriburl = contriburl, 3: installation of package 'cluster' had non-zero exit status in: install.packages(update[, "Package&qu...

...vector length (arg 1) in: cbind(1, pkgs, lib) 2: number of rows of result is not a multiple of vector length (arg 2) in: cbind(1, update[found, , drop = FALSE], file = files) 3: installation of package 'chron' had non-zero exit status in: install.packages(update[, "Package"], instlib, contriburl = contriburl, 4: installation of package 'VR' had non-zero exit status in: install.packages(update[, "Package"], instlib, contriburl = contriburl, 5: installation of package 'dse' had non-zero exit status in: install.packages(update[, "Package"], in...

...e Bristol UK repository. I installed a number of the additional R packages using synaptic which reported no errors but when I run my first update.packages() as an ordinary user I get this: The downloaded packages are in ?/tmp/Rtmp9LYziU/downloaded_packages? Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "/usr/lib/R/library"' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages In addition: Warning messages: 1: In insta...

Had some packages fail install so I updated to today's R-beta release. On updating packages the following packages still fail. sessionInfo follows. Mark Warning messages: 1: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : installation of package 'MANOR' had non-zero exit status 2: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : installation of package 'qvalue' had non-zero exit status 3: I...

Dear R-list, I have encountered the following error message trying to update R packages: > update.packages(ask='graphics') Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages I remember did not have the problem on the last update where R i...

...went to Update packages, chose the mirror and R detected the few packages that needed to be updated. After I clicked on OK I got the following error message: > update.packages(ask='graphics') --- Please select a CRAN mirror for use in this session --- Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "C:/PROGRA~2/R/R-211~1.1/library"' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages I've tried several times, th...

...rom 2.4.x to 2.6.2 via sudo apt-get install r-base which worked fine, installing all dependencies From R, as root, I did update.packages() but a number of packages packages failed to install, either for missing gfortran or missing dependencies. Warning messages: 1: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : installation of package 'maptools' had non-zero exit status 2: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : installation of package 'mvtnorm' had non-zero exit status 3:...

Hi, I run windows vista ultimate in my laptop and run R 2.5 I am trying to update the packages but it comes up with an error message ""Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages" I am the adminsitrator on this computer and logged in as a...

...low I called the function "update.packages.2" so to not mask the original update.packages) With much respect, Tal ############################### update.packages.2 <- function (lib.loc = NULL, repos = getOption("repos"), contriburl = contrib.url(repos, type), method, instlib = NULL, ask = TRUE, available = NULL, oldPkgs = NULL, ..., checkBuilt = FALSE, type = getOption("pkgType"), subset) { force(ask) text.select <- function(old) { update <- NULL for (k in seq_len(nrow(old))) { cat(old[k, "Package"], &qu...

...ran "update.packages(checkBuilt=TRUE, ask=FALSE) ras also recommended and selected the NS Cran mirror. On doing this the following error messages occurs: update.packages(checkBuilt=TRUE, ask=FALSE) --- Please select a CRAN mirror for use in this session --- Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "C:/Program Files/R/R-2.13.1/library"' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages Any suggestions as to how...

To whom it concenrt I am trying to update the R program 2.9 This is the message that the program give is: > update.packages(ask='graphics') Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "C:/PROGRA~1/R/R-29~1.0/library"' is not writable Erro em install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages I will wait for answer about this....

I have been trying to update some R packages but I get the following error. Can you advise how mow to get around this . I am using the R for 64 bit windows. --- Please select a CRAN mirror for use in this session --- Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "C:/PROGRA~1/R/R-211~1.1-X/library"' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages -- Thanks, Jim. [[alternat...

I'm running Linux Ubuntu and tried to update my packages using the update.package() command. It appeared to download the updates ok but I got the following message: The downloaded packages are in ?/tmp/RtmpFM82Ry/downloaded_packages? Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "/usr/lib/R/site-library"' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages Calls: update.packages -> install.pac...

I tried to update my packages using update.packages() I got the following message: The downloaded packages are in ?/tmp/RtmpyDYdTX/downloaded_packages? Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "/usr/lib/R/library"' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install package How do I fix this ? -- View this message in...

Anyone knows how to get around this message? I am trying to update some packages in R but I get the following message I use R for 64 bit windows. Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "C:/Program Files/R/R-2.14.1/library"' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages -- Thanks, Jim. [[alterna...

...e VR bundle that come with R. For those I get this (this is what I got when I tried to update lattice but I get a similar message for the VR bundle as well): > update.packages(ask='graphics') --- Please select a CRAN mirror for use in this session --- Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "C:/PROGRA~1/R/R-26~1.0/library"' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages I am using R-2.6.1 (even though t...

...39;car' successfully unpacked and MD5 sums checked package 'lattice' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Users\Sergey\AppData\Local\Temp\RtmpbQJHsb\downloaded_packages updating HTML package descriptions Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : 'lib = "C:/PROGRA~1/R/R-25~1.1/library"' is not writable Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to install packages > What can be wro...

...usr/lib/R/site-library" [4] "/usr/lib/R/library" That's the setup. The problem is that `update.packages()' does not consider packages in my personal library when determining what to update. To elaborate: Here's some output when I update packages: > update.packages(instlib=.libPaths()[1]) KernSmooth : Version 2.22-21 installed in /usr/lib/R/library Version 2.22-22 available at http://cran.cnr.Berkeley.edu Update (y/N/c)? ... I answer "yes" to everything, and the update succeeds; updated packages are installed into my personal library, `~/lib/R/i486-pc-li...

...ing R version 3.2.1 Patched (2015-07-16 r68681) nickname World-Famous Astronaut I have the options below: options(pkgType='binary') options(install.packages.check.source='no') For some, but not allI repositories I get the error message below: Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : specifying 'contriburl' or 'available' requires a single type, not type = "both" Is it a bug? Best, ///\\\///\\\///\\\///\\\///\\\///\\\///\\\///\\\ Jose Claudio Faria Estatistica UESC/DCET/Brasil joseclaudio.f...