search for: instdir

...ge(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error"))}) 29: try(.install_package_indices(".", instdir)) 30: do_install_source(pkg_name, instdir, pkg, desc) 31: do_install(pkg) 32: tools:::.install_packages() aborting ... Segmentation Fault - core dumped The downloaded packages are in '/tmp/RtmpVwIBsr/downloaded_packages' Updating HTML index of packages in '.Library' Warning...

I'm running R-1.4.1 on a linux debian (version 2.2) box. I've tried to upgrade to R-1.6.0, and the execution of make halts with the following error messages: make[4]: Entering directory `/home/tebaldi/R/R-1.6.0/src/library/methods' dumping R code in package 'methods' Error in testRversion(descfile) : This package has not been installed properly See the Note in ?library

Any BFD/AFP softwares available for FreeBSD 4.10? Im getting flooded with ssh and ftp attempts.

...le tools/install.R. The function does a lot of hardcoded 'chmod' with constant arguments: edd at max:~/svn/r-devel/src/library/tools/R$ grep Sys.chmod install.R if (!WINDOWS) Sys.chmod(file.path(dest, files), "755") Sys.chmod(file.path(instdir, f), "644") Sys.chmod(Sys.glob(file.path(instdir, "data", "*")), "644") Sys.chmod(Sys.glob(file.path(instdir, "demo", "*")), "644") Sys.chmod(Sys.glob(file.path(instdir, &quot...

...k() "works", i.e., supposedly not on Windows; however that maybe sufficient to close that bug report and also Kevin's issue, right ?] However, Kevin, in his posting, continues > I guess my wish here would be that R would check if any file already > existed at the 'instdir' path, and if it existed and was a symlink, R > would remove that symlink before install. are you sure? I think ... and from what you mention below ("packrat") it would rather be important to *keep* the symlink, and install to whereever the symlink is pointing, no ? &g...

...'MASS' is not a legal package name The code that I'm bumping into lives here: https://github.com/wch/r-source/blob/62f5acbdbdf36e1fc618510312125d1677d79941/src/library/tools/R/install.R#L283-L287 I guess my wish here would be that R would check if any file already existed at the 'instdir' path, and if it existed and was a symlink, R would remove that symlink before install. It could happen before creating the directory, e.g. here: https://github.com/wch/r-source/blob/62f5acbdbdf36e1fc618510312125d1677d79941/src/library/tools/R/install.R#L277-L281 One thing that was a bit surp...

Hi, does anybody have the R logo in a vector format preferable SVG? Need it for Freedesktop (GNOME desktop) integration of Rcmdr ... Thanx, jel. -- Otto-von-Guericke University http://www.cs.uni-magdeburg.de/ Department of Computer Science Geb. 29 R 027, Universitaetsplatz 2 39106 Magdeburg, Germany Tel: +49 391 67 12768

Dear R-devel members, I would like to compile a package with two seperate shared libraries. For example, in a package 'foo', a file 'bar.so' built from a distinct set of source files should be installed in addition to the default 'foo.so' (or .dll on windows). Does anyone know about a way to achieve this without having a custom Makefile, e.g. via 'Makevars'?

...messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error"))}) 16: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 17: do_install_source(pkg_name, instdir, pkg, desc) 18: do_install(pkg) 19: tools:::.install_packages() aborting ... /usr/local/lib64/R/bin/INSTALL: line 34: 26393 Done echo 'tools:::.install_packages()' 26394 Segmentation fault (core dumped) | R_DEFAULT_PACKAGES= LC_COLLATE=C "${R_HOME}/bin/R" $myArgs --slave --args ${...

...posedly not on Windows; however > that maybe sufficient to close that bug report and also Kevin's > issue, right ?] > > However, Kevin, in his posting, continues > > > I guess my wish here would be that R would check if any file already > > existed at the 'instdir' path, and if it existed and was a symlink, R > > would remove that symlink before install. > > are you sure? > I think ... and from what you mention below ("packrat") it would > rather be important to *keep* the symlink, and install to > whereever the symlink...

...html targetIntervals html theme_no_space html ** building package indices ** testing if installed package can be loaded from temporary location WARNING: moving package to final location failed, copying instead Warning in file.copy(instdir, dirname(final_instdir), recursive = TRUE, : problem copying C:\Program Files\R\R-3.6.0\library\00LOCK-penaltyLearning\00new\penaltyLearning\libs\x64\penaltyLearning.dll to C:\Program Files\R\R-3.6.0\library\penaltyLearning\libs\x64\penaltyLearning.dll: Permission denied ** testing if installed...

Reid, I think it is the first time it is run that the errors occcur !? Not sure but that would seem logical. Aaron

...etIntervals html > theme_no_space html > ** building package indices > ** testing if installed package can be loaded from temporary location > WARNING: moving package to final location failed, copying instead > Warning in file.copy(instdir, dirname(final_instdir), recursive = TRUE, : > problem copying C:\Program > Files\R\R-3.6.0\library\00LOCK-penaltyLearning\00new\penaltyLearning\libs\x64\penaltyLearning.dll > to C:\Program > Files\R\R-3.6.0\library\penaltyLearning\libs\x64\penaltyLearning.dll: > Permission denied...

...staged installation, for instance by setting environment variable 'R_INSTALL_STAGED=false' avoids this problem. # TROUBLESHOOTING I think it comes down to the following call in src/library/tools/R/install.R: status <- system(paste("mv -f", shQuote(instdir), shQuote(dirname(final_instdir)))) https://github.com/wch/r-source/blob/d253331f578814f919f150ffdf1fe581618079a3/src/library/tools/R/install.R#L1645-L1647 which effectively does: $ mkdir -p path/pkg ## empty final destination placeholder(?) $ mkdir -p path/to/pkg $ mv...

The bulk is on my forums - the final post for today is: Results to date: A. It looks like I am going to need a newer compiler for C - xlc/xlC V11 apparently does not understand this code: "/data/prj/cran/R-3.2.3/src/main/memory.c", line 2149.31: 1506-046 (S) Syntax error. I will have to check if R-devel has different code before asking for assistence. +2139 #ifdef

...html > > theme_no_space html > > ** building package indices > > ** testing if installed package can be loaded from temporary location > > WARNING: moving package to final location failed, copying instead > > Warning in file.copy(instdir, dirname(final_instdir), recursive = TRUE, > : > > problem copying C:\Program > > > Files\R\R-3.6.0\library\00LOCK-penaltyLearning\00new\penaltyLearning\libs\x64\penaltyLearning.dll > > to C:\Program > > Files\R\R-3.6.0\library\penaltyLearning\libs\x64\penaltyLearnin...

.../cluster/bin/R-3.4/library/WGCNA? *** caught segfault *** address (nil), cause 'memory not mapped' Traceback: 1: q("no", status = status, runLast = FALSE) 2: do_exit(status = status) 3: do_exit_on_error() 4: errmsg("loading failed") 5: do_install_source(pkg_name, instdir, pkg, desc) 6: do_install(pkg) 7: tools:::.install_packages() An irrecoverable exception occurred. R is aborting now ... Segmentation fault The downloaded source packages are in ?/tmp/RtmpQ3mLx7/downloaded_packages? Updating HTML index of packages in '.Library' Making 'packages.h...

...LL_STAGED=false' avoids this problem. > > > > > > # TROUBLESHOOTING > > > > I think it comes down to the following call in src/library/tools/R/install.R: > > > > status <- system(paste("mv -f", > > shQuote(instdir), > > shQuote(dirname(final_instdir)))) > > > > https://github.com/wch/r-source/blob/d253331f578814f919f150ffdf1fe581618079a3/src/library/tools/R/install.R#L1645-L1647 > > > > which effectively does: > > > > $ mkdir -p path/pkg ##...

...g environment > variable 'R_INSTALL_STAGED=false' avoids this problem. > > > # TROUBLESHOOTING > > I think it comes down to the following call in src/library/tools/R/install.R: > > status <- system(paste("mv -f", > shQuote(instdir), > shQuote(dirname(final_instdir)))) > > https://github.com/wch/r-source/blob/d253331f578814f919f150ffdf1fe581618079a3/src/library/tools/R/install.R#L1645-L1647 > > which effectively does: > > $ mkdir -p path/pkg ## empty final destination placeholde...

...>>> theme_no_space html >>> ** building package indices >>> ** testing if installed package can be loaded from temporary location >>> WARNING: moving package to final location failed, copying instead >>> Warning in file.copy(instdir, dirname(final_instdir), recursive = TRUE, >> : >>> problem copying C:\Program >>> >> Files\R\R-3.6.0\library\00LOCK-penaltyLearning\00new\penaltyLearning\libs\x64\penaltyLearning.dll >>> to C:\Program >>> Files\R\R-3.6.0\library\penaltyLearning\li...