search for: inla

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2019 Sep 06
1
Cryptic error message from namespaceExport
Dear Michael, my package has setOldClass("inla") and the NAMESPACE contains exportClasses(inla) and importFrom(INLA, inla.posterior.sample) the old version of INLA uses the S3 class "inla" but does not export it. the new version of INLA has setOldClass("inla") and the NAMESPACE contains exportClasses(inla) installing...
2019 Sep 06
2
Cryptic error message from namespaceExport
Dear all, Today I got this error message (R 3.6.1) when installing my package: Error: package or namespace load failed for ?inlatools? in namespaceExport(ns, exports): undefined exports: .__C__inla My package was using setOldClass("inla") and exported the "inla" class via the NAMESPACE. It imports functions from the INLA package. Older versions of the INLA package did not export the "inla" cla...
2012 Mar 15
1
Problem reading a graph file
...gència de Salut Pública de Barcelona Pl. Lesseps 1. 08023 Barcelona Tel. 93 2027775 | Fax. 93 3686943 www.aspb.cat El 15 de marzo de 2012 13:35, Marc Marí Dell'Olmo <mmari@aspb.cat> escribió: > I am analysing a lot of cities, and with the testing version I have the > problem that INLA not works for some of them. I think that cities that do > not work are those with a lot of areas and, therefore, with big graph > files. For example I am working with cities with more than 3000 areas... is > it possible?? > > Marc Marí-Dell'Olmo > CIBER Epidemiología y Salud P...
2017 Jun 20
0
New book: Spatial, Temporal and Spatial-Temporal Ecological Data Analysis with R-INLA
We are pleased to announce the following book: Spatial, Temporal and Spatial-Temporal Ecological Data Analysis with R-INLA Authors: Zuur, Ieno, Saveliev Book website: www.highstat.com Paperback or EBook can be order (exclusively) from www.highstat.com TOC: http://highstat.com/Books/BGS/SpatialTemp/Zuuretal2017_TOCOnline.pdf Summary: We explain how to apply linear regression models, generalised linear models (GLM),...
2019 Sep 06
0
Cryptic error message from namespaceExport
...)? A simple reproducible example would help. On Fri, Sep 6, 2019 at 7:48 AM Thierry Onkelinx via R-devel <r-devel at r-project.org> wrote: > > Dear all, > > Today I got this error message (R 3.6.1) when installing my package: > > Error: package or namespace load failed for ?inlatools? in > namespaceExport(ns, exports): > undefined exports: .__C__inla > > My package was using setOldClass("inla") and exported the "inla" class via > the NAMESPACE. It imports functions from the INLA package. Older versions > of the INLA package did not ex...
2013 Feb 14
1
hyper-parameters
I'm searching a method to estimate the hyper-parameters in arima models. I'm reading about r-inla package, but in the examples section only talk about the AR part of the arima, but i need help about the MA part too. I'm beginner in Bayesian methods, I'm reading the documentation about dlm package and kalman filters, but the computacional cost of inla i think is better, but only AR mod...
2011 Dec 07
1
How to fit the log Gaussian Cox process model
Hi, As far as I know, there exist some programs via the function INLA, but I'm so curious if there is a specific function directly used to fit the log Gaussian Cox process model and predict the latent Gaussian field. That is, if I have a data points, then I input it in the function and don't need to revise the program. Thanks for your help. Joseph -- Vie...
2017 Oct 31
0
Course in Lisbon: Introduction to Linear Mixed Effects Models and GLMM with R
...L: www.highstat.com And: NIOZ Royal Netherlands Institute for Sea Research, Department of Coastal Systems, and Utrecht University, P.O. Box 59, 1790 AB Den Burg, Texel, The Netherlands Author of: 1. Beginner's Guide to Spatial, Temporal and Spatial-Temporal Ecological Data Analysis with R-INLA. (2017). 2. Beginner's Guide to Zero-Inflated Models with R (2016). 3. Beginner's Guide to Data Exploration and Visualisation with R (2015). 4. Beginner's Guide to GAMM with R (2014). 5. Beginner's Guide to GLM and GLMM with R (2013). 6. Beginner's Guide to GAM with R (2012). 7....
2010 Feb 04
1
Bug in as.character? (PR#14206)
...UMERIC=C;LC_TIME=en_DK.utf8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C Search Path: .GlobalEnv, package:stats, package:graphics, package:grDevices, package:datasets, package:INLA, package:R.utils, package:R.oo, package:utils, package:R.methodsS3, package:methods, Autoloads, package:base -- H??vard Rue Department of Mathematical Sciences Norwegian University of Science and Technology N-7491 Trondheim, Norway Voice: +47-7359-3533 URL : http://www.math.ntnu.no/~hrue...
2012 Oct 10
1
glmmPQL and spatial correlation
Hi all, I'm running into some computer issues when trying to run a binomial model for spatially correlated data using glmmPQL and was wondering if anyone could help me out. My whole dataset consists of about 300,000 points for which I have a suite of environmental variables (I'm trying to come up with a habitat model for a species of seal, using real (presence) and simulated dives
2013 Jun 03
1
Mixed effects model with a phylogenetic tree/ distance matrix as a random effect
Hi, I'm trying to build a mixed-effects model in which I'd like to include either a distance matrix or a phylogenetic tree as a random effect. The troubles I've had are that: 1. Function lmer() in package lme4 only accepts a data frame column as a random factor and not a distance matrix. 2. Function MCMCglmm() in package MCMCglmm only accepts a rooted and ultrametric phylogenetic