search for: inbred

Dear List, I downloaded R for the first time yesterday, in the hopes that I might deal more effectively with a complex repeated measures experimental design involving inbred strains of laboratory mice. The design below, somewhat simplified, cannot be computed with standard ANOVA, because something called the X'X matrix is too large. The design has the following factors: Between-subject factors (levels): inbred mouse strain (20, "twenty") sex (2) Ani...

Package bqtl version 1.0 is now available on CRAN. Description: QTL mapping toolkit for inbred crosses and recombinant inbred lines. Includes maximum likelihood and Bayesian tools. I am keen to have comments about this package including implementation details, additional functionality, and (of course) problems and bugs. Chuck Berry -- Charles C. Berry (858) 534-20...

...ell as other likelihood-based pedigree analyses. While a rudimentary version of the package has existed for a while, it was never properly introduced to this forum. The present version is a major update with new and improved functions. Features: * Singlepoint LOD scores for simple/complex/inbred pedigrees (implementing the Elston-Stewart algorithm). Allows partial genotypes (i.e. with one missing allele) * Multipoint analysis is provided through a wrapper for MERLIN. The wrapper creates all necessary files automatically, and makes it easy to re-run analysis under different models...

...ell as other likelihood-based pedigree analyses. While a rudimentary version of the package has existed for a while, it was never properly introduced to this forum. The present version is a major update with new and improved functions. Features: * Singlepoint LOD scores for simple/complex/inbred pedigrees (implementing the Elston-Stewart algorithm). Allows partial genotypes (i.e. with one missing allele) * Multipoint analysis is provided through a wrapper for MERLIN. The wrapper creates all necessary files automatically, and makes it easy to re-run analysis under different models...

I''m in the process of setting up our puppet environment, and am creating dummy classes so that I can test/use our node classification script, however my dummy classes are throwing the following error. puppetmasterd[3908]: Could not parse for environment production: Syntax error at ''Stage_cis2'' at /etc/puppet/manifests/classes/ Stage_cis2.pp:2 As you see, the actual

...s are well known since the end of the 19th century. One important consequence of these rules is that in all diploid organisms (having two copies of the genomes, i.e. most of them, including us), it is virtually impossible to produce an equal number of offspring of each "type" from non-inbred parents: you end up, most of the time, with frequencies such as 1/4 vs 3/4, or 7/16 vs 9/16, or many other combinations. For quantitative traits, the link between the genes and the characters is complex, and the effect of genes has to be measured through models that look like cross-factor ANOVA...

...s are well known since the end of the 19th century. One important consequence of these rules is that in all diploid organisms (having two copies of the genomes, i.e. most of them, including us), it is virtually impossible to produce an equal number of offspring of each "type" from non-inbred parents: you end up, most of the time, with frequencies such as 1/4 vs 3/4, or 7/16 vs 9/16, or many other combinations. For quantitative traits, the link between the genes and the characters is complex, and the effect of genes has to be measured through models that look like cross-factor ANOVA...

Hi All, I am trying to build a new R package to submit, but it's failing to create a tex manual: R CMD check Biodem * checking for working latex ... OK * using log directory '/home/greatsage/Fede/R-packages/temp/Biodem.Rcheck' * checking for file 'Biodem/DESCRIPTION' ... OK * checking if this is a source package ... OK * Installing *source* package 'Biodem' ... ** R