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...o alter a package to recognize the boxes and output a 0 or 1 to correspond to whether the box is empty or not. From there, I could write if/then statements to convert the output into the relevant answers to the questions in the survey, and export it for analysis. I've been playing around with imageHTS and EBImage, but haven't been able to alter the configuration files that come with the packages for use in identifying cells, electrophorisis screens, etc. The surveys all have a line down the middle and an ID number on each page, which should serve as anchors for the program as it identifies...