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Hi! I have installed the new R on windows. I wanted to reinstall the XML package. I am not able to find the XML.zip anymore. I am quite shure that they where a windows binary version. Has anyone old XML windows binary? Eryk Dipl. bio-chem. Eryk Witold Wolski @ MPI-MG Dep. Vertebrate Genomics Ihnestrasse 73 14195 Berlin 'v' tel: 0049-30-84131285 / \ mail: wolski@molgen.mpg.de ---W-W---- [[alternative HTML version deleted]]

...ory. ./configure --prefix=/non/standard/directory The installation works fine. But after starting R i get .libPaths() /usr/lib/R/library but they cant be there of course! Have I to set some additional switches during config? Eryk Dipl. bio-chem. Eryk Witold Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-84131469 / \ mail: wolski@molgen.mpg.de ---W-W---- http://www.molgen.mpg.de/~wolski [[alternative HTML version deleted]]

...in that if they would be generic then i still can use the neat names with my objects? I have the impression that there are more and more packages are going to be developed. How this is going to be handled in future? Eryk. Dipl. bio-chem. Eryk Witold Wolski @ MPI-MG Dep. Vertebrate Genomics Ihnestrasse 73 14195 Berlin 'v' tel: 0049-30-84131285 / \ mail: wolski@molgen.mpg.de ---W-W---- [[alternative HTML version deleted]]

hello I am returning to some libraries that I had previously customised by amongst other things adding additional functions. I had simply typed these new functions into the file in library/R/thelibrary. These however do not seem to be loaded now as they previously were under older versions of R. What's changed and what do i need to do? Thanks Stephen

...omething="there"),method="POST"). Has anyone a package with a similar functionality like the LWP and HTTP::Request::Common packages in Perl? Or has anybody a function that sends a post to a server? Eryk Dipl. bio-chem. Eryk Witold Wolski @ MPI-MG Dep. Vertebrate Genomics Ihnestrasse 73 14195 Berlin 'v' tel: 0049-30-84131285 / \ mail: wolski@molgen.mpg.de ---W-W---- [[alternate HTML version deleted]]

Hi! Are there scripts or packages for generating Rd files out of "S3" code on cran? Has any one written such scripts (e.g. in Perl?) and are willing to share them? Thanks in advance. Eryk. Dipl. bio-chem. Eryk Witold Wolski @ MPI-MG Dep. Vertebrate Genomics Ihnestrasse 73 14195 Berlin 'v' tel: 0049-30-84131285 / \ mail: wolski@molgen.mpg.de ---W-W---- [[alternative HTML version deleted]]

Hi! How to generate a empty string of a precise length without using a loop? I need a empty string (char **) to pass it with .C function to a c dll. The c routine writes the result into the string. Eryk. Dipl. bio-chem. Eryk Witold Wolski @ MPI-MG Dep. Vertebrate Genomics Ihnestrasse 73 14195 Berlin 'v' tel: 0049-30-84131285 / \ mail: wolski@molgen.mpg.de ---W-W---- http://www.molgen.mpg.de/~wolski [[alternative HTML version deleted]]

...s only for objects of class Myclass Is it possible to use something like setMethod("rbind",signature(...="Myclass",deparse.level="numeric") This gives an error. Or should I use rbind.Myclass Eryk. Dipl. bio-chem. Eryk Witold Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: wolski at molgen.mpg.de ---W-W---- http://www.molgen.mpg.de/~wolski

...r(mfrwo=c(2,1)) which does not work. Is there a way to force levelplot to use only a half of the graphic device? Is there a function like image which provides the color scale and is working with par(mfrow, mfcol....? Eryk Dipl. bio-chem. Eryk Witold Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: wolski at molgen.mpg.de ---W-W---- http://www.molgen.mpg.de/~wolski

...other distances are in the range 1e10+-5000. I would like to show the tree only for the height of 1e10+-5000 but unfortunately their are no parameter like xlim,ylim in the function? Are there other ways to ZOOM? Any suggestions? /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __("< _ http://www.molgen.mpg.de/~wolski \__/ 'v' http://r4proteomics.sourceforge.net || / \ mail: witek96 at users.sourceforge.net ^^ m m wolski at molgen.mpg.de

...N 3-900051-07-0 Some addtitional info about Npatrick1 > is(Npatrick1) [1] "Massvectorlist" "Mlist" "List" "list" [5] "vector" /E Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: witek96@users.sourceforge.net ---W-W---- http://www.molgen.mpg.de/~wolski wolski@molgen.mpg.de

...he file nameofmypackage-internal.Rd as advised. After R CMD check (which runs neatly) they are still listed in 00Index.html. Is there no way to hide internal functions from the doc? Have I overlook something? Sincerely Eryk. Dipl. bio-chem. Eryk Witold Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: wolski at molgen.mpg.de ---W-W---- http://www.molgen.mpg.de/~wolski

Hi! I have implemented class specific behaviour of "[[<-.myclass"<-function(). How it is posible to call the "[[.default" on an object of myclass? Eryk Dipl. bio-chem. Eryk Witold Wolski @ MPI-MG Dep. Vertebrate Genomics Ihnestrasse 73 14195 Berlin 'v' tel: 0049-30-84131285 / \ mail: wolski@molgen.mpg.de ---W-W---- [[alternative HTML version deleted]]

.... x <- rnorm(10000) y <- rnorm(10000) bin <- hexbin(x,y) ## Plot : Note that 'gplot.hexbin' is the S4 plot method for hexbin ! ## ---- ------------ -------------- plot(bin) /E Dipl. bio-chem. Eryk Witold Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: witek96 at users.sourceforge.net ---W-W---- http://r4proteomics.sourceforg.net

...ot;incredible important"). and call the plot.default function with this list as parameters. I know that there are the way with eval(parse(text = paste("plot.default",........ Is there a different one? Eryk Dipl. bio-chem. Eryk Witold Wolski @ MPI-MG Dep. Vertebrate Genomics Ihnestrasse 73 14195 Berlin 'v' tel: 0049-30-84131285 / \ mail: wolski@molgen.mpg.de ---W-W---- [[alternative HTML version deleted]]

...the colors by param _fill_ the parameter _col_ is not used anyway but still available and set already to black in the parameter declaration. Therefore why not use it to specify colors to borders of boxes? Yours /E Dipl. bio-chem. Eryk Witold Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: witek96@users.sourceforge.net ---W-W---- http://r4proteomics.sourceforg.net

...{ res<-rep(NA,length(unique(x)) count<-0 for(i in x) { if(!i%in%res) { count<-count+1 res[count]<-i } } res } /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski / \ mail: witek96@users.sourceforge.net ---W-W---- wolski@molgen.mpg.de

...f=function(object) { print(length(object)) } ) xx<-as.list(1:4) names(xx)<-letters[1:4] mvca<-new("MVCa") mvca@list<-xx printlength(mvca) Any suggestions? /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 __("< 'v' http://www.molgen.mpg.de/~wolski \__/ / \ mail: witek96@users.sourceforge.net ^^ w w wolski@molgen.mpg.de

...e >silhouette.default Error: Object "silhouette.default" not found R1.9.0 The same error are at R1.8.1 And I knew that a function silhoutte.default are present. But the same piece of code works in R1.6.2 ??? Eryk Dipl. bio-chem. Eryk Witold Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: wolski at molgen.mpg.de ---W-W---- http://www.molgen.mpg.de/~wolski

I have been struggling with this problem for a while and I hope someone could help me. Or if someone could point me to a section in the manual I would be grateful. x <- "my" plot(1:10, main=expression(paste( x, Delta, "values" ))) Q : How do I get the title to say "my (triangle symbol) values" ? The following trial-and-error produced mainly errors :