search for: igraph_vertex

...'figures/AES_network_bymembership.tiff' Kind regards Sibylle -----Original Message----- From: Ivan Krylov <ikrylov at disroot.org> Sent: Monday, February 26, 2024 10:15 AM To: SIBYLLE ST?CKLI via R-help <r-help at r-project.org> Cc: sibylle.stoeckli at gmx.ch Subject: Re: [R] igraph_vertex ? Mon, 26 Feb 2024 09:02:56 +0100 SIBYLLE ST?CKLI via R-help <r-help at r-project.org> ?????: > In the following code, which loads the tiff file, I get the following > error This warning is definitely worth investigating, but it shouldn't interrupt your code. Does the figure com...

? Mon, 26 Feb 2024 09:02:56 +0100 SIBYLLE ST?CKLI via R-help <r-help at r-project.org> ?????: > In the following code, which loads the tiff file, I get the following > error This warning is definitely worth investigating, but it shouldn't interrupt your code. Does the figure come out wrong after you see this warning? > In doTryCatch(return(expr), name, parentenv, handler) :

...osition = "right", panel.background = element_rect(fill = "black")) dev.off() -----Original Message----- From: R-help <r-help-bounces at r-project.org> On Behalf Of Kimmo Elo Sent: Monday, February 26, 2024 8:10 AM To: r-help at r-project.org Subject: Re: [R] igraph_vertex Hi, a quick additional note: try "edge.width= E(.)$weight" instead of the current "edge.width= network". Seems to work and makes a visible difference... HTH, Kimmo su, 2024-02-25 kello 19:11 +0000, Kimmo Elo kirjoitti: > > Hi again, > > your code is still no...

The reason html is specifically advised against as a format is that it does things like mangling data such as is happening in your example. You should repost using settings on you mail client for plain-text. Your code should start by loading necessary packages. You should also not post screen output versions of code since that will insert lots of superfluous "+"'s. Some but not

On 2/24/24 12:10, Kimmo Elo wrote: > Hi, > > first of all, your example was not reproducible! But once I added > "library(igraph)" and "library(scico)" plus generally replaced > "aes_collapsed" by "edge_list", I started to work :-) After copying your lead in that replacement the error I got was: network <-

Dear coummunity Thanks a lot to David and Kimmo. Yes I see now that I need to provide the two raw tables. Find here the reproducible example. Kind regards Sibylle # R-labraries library(circlize) library(ggplot2) library(igraph) library(tidyverse) library(RColorBrewer) library(stringi) library(scico) library(plotly) library(ggraph) # Tables aes<-read.csv("Test_adjac.csv",

Hi, first of all, your example was not reproducible! But once I added "library(igraph)" and "library(scico)" plus generally replaced "aes_collapsed" by "edge_list", I started to work :-) Anyway, the error is produced by this line: + edge.width= network, It seems to me that you have forgotten to name a variable here (you now use the whole network

Hi, a quick additional note: try "edge.width= E(.)$weight" instead of the current "edge.width= network". Seems to work and makes a visible difference... HTH, Kimmo su, 2024-02-25 kello 19:11 +0000, Kimmo Elo kirjoitti: > > Hi again, > > your code is still not reproducible without modifications, but I > succeed in getting the data straight. All

Hi again, your code is still not reproducible without modifications, but I succeed in getting the data straight. All read.csv-command are missing 'sep="\t"', it is need to read you tsv-data. And it could be more reproducible if you used e.g. --- snip --- aes<-read.csv(text=" A.A B.B C.C D.D E.E F.F A.A 0 0 5 5 5 5 B.B 4 0 1 1 1 1 C.C 5 5 0 5 4 2 D.D 5 0 5 0 5 3 E.E

Dear R-community It would be nice to get some input how to find a solution for the following error in igraph and vertex setting. Thank you very much Sibylle > par(bg="black") > network %>% plot( + vertex.color=clrs[V(.)$community], + vertex.size=V(.)$hub_score*1, + vertex.frame.color=V(.)$color, + vertex.label.color="white", +