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2004 Sep 21
2
Bootstrap ICC estimate with nested data
...ghts on using the bootstrap functions in the library "bootstrap" to estimate confidence intervals of ICC values calculated in lme. In lme, the ICC is calculated as tau/(tau+sigma-squared). So, for instance the ICC in the following example is 0.116: > tmod<-lme(CINISMO~1,random=~1|IDGRUP,data=TDAT) > VarCorr(tmod) IDGRUP = pdLogChol(1) Variance StdDev (Intercept) 0.1829931 0.427777 Residual 1.3907732 1.179310 > 0.18299/(0.18299+1.39077) [1] 0.1162757 Using the bootstrap library, I can set up theta to do the ICC as follows: >theta<-function(x,DATA){t...