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...appreciate if you could help me setting this up. Could you please send me an easy guideline to get affylmGUI working? Otherwise, we could use TeamViewer if that would be easier. Kind regards, Lorenzo Lorenzo Melchor, PhD Mammary Stem Cell Team The Breakthrough Breast Cancer Research Centre (ICR) 237 Fulham Road SW3 6JB lorenzo.melchor at icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail message is c...

..., I get a messeage that- R GUI front-end has stopped working. Why this happens? What is the solution? The r codes are as follows: a<-read.table("d:/bmt.txt",header=T") cutoffs<-c(1.75,3.34,5.09,6.93,9.11,11.8,15.3,20.1,23.7,27.3,30.9,34.3,37.6,41.5,46.5,51.1,57,63,73.1,93.68) a$icr <- REL library(pseudo) pseudo <- pseudoci(time=a$TIME,event=a$icr,tmax=cutoffs) #rearranging data b <- NULL for(it in 1:length(pseudo$time)){ b <- rbind(b,cbind(a,pseudo = pseudo$pseudo[[1]][,it], tpseudo = pseudo$time[it],id=1:nrow(a))) } b <- b[order(b$id),] library(geepac...

...the sort of the thing that the reshape library should be able to do, but I just can't work out how to do it. Many thanks Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...barplot(list(as.matrix(var1),as.matrix(var2))) would work, but it didn't. Any suggestions you could make would be great. Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...analysis. Could anyone tell me the best way to do this? Would it be more appropriate to use an external tool first? Thanks Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...quote(x>=5.("%")) almost works but includes brackets. Anyonw know how to solve this one Dan PS I am running R 2.9.0 -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...a 4 b1 b 6 b3 b 7 b3 I have been looking at ddply but can't seem to work it out. ANy help would be gratefully received. Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...ems to support this. I would have thought, x[order(x$One,x$Two,decreasing=c(T,F)),] would do it but it doesn't. Thanks Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...frame that are factors. I have tried: apply(df,2,class) but all the columns come back as class "character". Thanks Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...ne, pos, outer, : 'labels' is supplied and not 'at' Any ideas? Is there are a more appropriate plot type? -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...$DoB,format="%d.%m.%y") - 100*365 But that doesn't seem to work out correctly. Any ideas how to do this? Thanks Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...=wells$dist, hessian=TRUE) : cannot coerce type closure to double vector This seems like a bug... Or can you help me find the mistake I made? Thanks, Christa -- Christa Deiwiks International Conflict Research ETH Zurich Seilergraben 49 (SEI E.3) 8092 Zurich Ph: +41 44 632 67 60 http://www.icr.ethz.ch/people/deiwiks

...like to convert it to a data.frame of ID, Date & Value but I thought the above would be an appropriate middle step. Thanks Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

Hi, I have a script that takes a subset of genes on a microarray and tries to fit a coxph model to the expression values for each gene. This seems to work fine but in some cases it produces warnings and/or errors. For example: Error in fitter(X, Y, strats, offset, init, control, weights = weights, : NA/NaN/Inf in foreign function call (arg 6) In addit...

...5996*Std.Error or is there another approach that doesn't assume a normal distrbution? Thanks. Apologies for my naiivity Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...st. I would like to know what the suggested sample sizes would be to pick a difference when the control to active are in a ratio of 80% to 20%. Thanks Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

Hi, I was just wondering if anyone had created a 64 bit binary for SUSE 10.1 x86_64 yet. Unfortunately, I upgraded before looking whether a package was available and now cannot find a suitable package on CRAN. If noone has produced one yet, does anyone have any idea when one will be available? Many Thanks Daniel Brewer

...s received by anyone other than the addressee, please return the message to the sender by replying to it and then delete the message from your computer and network. -------------- next part -------------- Lorenzo Melchor, PhD Mammary Stem Cell Team The Breakthrough Breast Cancer Research Centre (ICR) 237 Fulham Road SW3 6JB lorenzo.melchor at icr.ac.uk

...5) Is this the best approach? or is there an inbuilt function? I have looked at difftime but that does not seem to allow output in years. Many thanks Dan -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Email: daniel.brewer at icr.ac.uk ************************************************************** The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail...

...return 0; > >> +} > >> + > >> +static void vmi_apic_write(u32 reg, u32 val) > >> +{ > >> + /* Warn to see if there's any stray references */ > >> + WARN_ON(1); > >> +} > >> + > >> +static u64 vmi_apic_icr_read(void) > >> +{ > >> + return 0; > >> +} > >> + > >> +static void vmi_apic_icr_write(u32 low, u32 id) > >> +{ > >> + /* Warn to see if there's any stray references */ > >> + WARN_ON(1); > >> +}...