search for: icpc

...ction: 69 trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/geepack_1.0-17.tar.gz' Content type 'application/x-gzip' length 166195 bytes (162 Kb) opened URL ================================================== downloaded 162 Kb * installing *source* package ?geepack? ... ** libs icpc -I/usr/global/R/2.11.0/lib64/R/include -I../inst/include -I/usr/local/include -mp -fpic -g -O2 -c famstr.cc -o famstr.o icpc: command line remark #10010: option '-mp' is deprecated and will be removed in a future release. See '-help deprecated' ../inst/include/tnt/vec.h(152): war...

...d not attached): [1] tools_3.1.3 Abbreviated versions of the output from R CMD INSTALL: For caTools: * installing to library ?/scratch3/BMC/co2/lib/R-3.1/x86_64-unknown-linux-gnu? * installing *source* package ?caTools? ... ** package ?caTools? successfully unpacked and MD5 sums checked ** libs icpc -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -fp-model precise -c Gif2R.cpp -o Gif2R.o icpc -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -fp-model precise -c GifTools.cpp -o GifTools.o icc -std=gnu99 -I/apps/R/3.1.3...

...this version of R was installed by the admins). Using "R CMD config", I see the following relevant settings: DYLIB_LD = icc -std=gnu99 DYLIB_LDFLAGS = -shared -openmp LDFLAGS = -L/opt/compilers/intel/cce/9.1.039/lib -L/opt/compilers/intel/fce/9.1.033/lib -L/usr/local/lib64 SHLIB_CXXLD = icpc SHLIB_CXXLDFLAGS = SHLIB_LD = icc -std=gnu99 SHLIB_LDFLAGS = -shared It looks like the SHLIB_CXXLDFLAGS is missing the "-shared -lR -L<loc-of-libR>". It's a mystery to me how R was built and configured such that it has incomplete/incorrect flags. By trial and error I figured...

...s the set the "-host" option indicating a cross compilation. Intel suggests to use "x86_64-unknown-linux-gnu". However, either using "x86_64-unknown-linux-gnu" or something unknown like "unknown" brings me through the configuration: ../llvm/configure CXX=icpc CC=icc CXXFLAGS="-O3 -mmic" CFLAGS="-O3 -mmic" --host=x86_64-unknown-linux-gnu configure: WARNING: If you wanted to set the --build type, don't use --host. If a cross compiler is detected then cross compile mode will be used. checking for x86_64-unknown-linux-gnu-clan...

...nder if that might be the issue. Below, there's information on my > platform, compiler, and some diagnostic output showing the errors. > > Advice appreciated! > > Thanks, > > Andy There are two things missing when R tries to create the shared object file on this line: icpc -L/usr/local/lib64 -o e1071.so Rsvm.o cmeans.o cshell.o floyd.o svm.o Firstly, the compiler flag "-shared" is missing. It tells the compiler to build a shared object instead of an executable. Secondly the linker flag "-lR" is missing, along with the "-L" flag that tel...

Let me add that when not specifying the '--host' option, the whole thing fails as well: ../llvm/configure CXX=icpc CC=icc CXXFLAGS="-O3 -mmic" CFLAGS="-O3 -mmic" checking for C compiler default output file name... a.out checking whether the C compiler works... configure: error: cannot run C compiled programs. If you meant to cross compile, use `--host'. Frank On 02/12/13 15:09, Fran...

...elow, but then the R build blows up with the config tail output that follows far below. It looks like gcc is still being searched for. I did read the R install and admin manual but could not find an answer. Help? CC=icc CFLAGS="-fast -unroll" F77=ifort FLAGS="-fast -unroll" CXX=icpc CXXFLAGS="-fast -unroll" FC=ifort FCFLAGS="-fast -unroll" LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/local/lib64" SHLIB_CXXLD=icpc ../configure --prefix=/N/u/mkimpel/Quarry/R_HOME/R-patched/R-build\ CC=icc CFLAGS="-fast -unroll -wd188" F77=ifort FFLAGS="-fa...

...========================================== CMP_LIB_PATH=/opt/intel/lib/intel64 MKL_LIB_PATH=/opt/intel/composerxe/mkl/lib/intel64 INC_LIB_PATH=/usr/local/lib export CC="icc -std=c99" export CFLAGS="-g -O3 -wd188 -ip" export F77=ifort export FFLAGS="-g -O3" export CXX=icpc export CXXFLAGS="-g -O3" export FC=ifort export FCFLAGS="-g -O3" export SHLIB_CXXLD=icpc export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MKL_LIB_PATH}:${INC_LIB_PATH}:${CMP_LIB_PATH} export LDFLAGS="-L${MKL_LIB_PATH},-L${INC_LIB_PATH},-L${CMP_LIB_PATH},-Bdirect,--hash-style=bo...

...ck is that I don't have a fortran cross compiler and I would like to know if it's possible to build a minimal R system without the need of a fortran compiler. At the moment I've used the following options with the configure script: ./configure --host=x86_64 --enable-R-static-lib CXX=icpc CC=icc CFLAGS=-mmic CXXFLAGS=-mmic LDFLAGS=-mmic --with-readline=no --without-recommended-packages icpc and icc are the intel compilers. -mmic tells the compiler to cross compile for the Intel Xeon Phi. The configure script stops with the following error: checking for dummy main to link with For...

....net/translator/dl/statistics.correlation.cpp.zip 2) moved the contents of the libs dir into the parent dir alongside correlation.cpp (didn't know how to tell R where to look for C libraries) 3) Tried: "R CMD SHLIB correlation.cpp" and got the following as output: - -- start output -- icpc -I/tools/R/2.7.1/lib/R/include -I/usr/local/include -mp -fpic - -g -O2 -c correlation.cpp -o correlation.o ap.h(163): warning #858: type qualifier on return type is meaningless const bool operator==(const complex& lhs, const complex& rhs); ^ ap.h(164): warning #858: type...

...: 1: Download & Install all the Intel Compilers (as well as the Intel Math Kernel Library) (All defaults) 2: Set up my environment variables in profile.d, using the handy scripts found here: https://lists.sdsc.edu/pipermail/npaci-rocks-discussion/2005-November/015012.html (although I added the icpc variable myself). 3: Set up config.site as follows (mostly taken from the guide): CC=icc CFLAGS="-g -O3 -wd188 -ip" CPPFLAGS="-no-gcc" F77=ifort FLAGS="-g -O3" CXX=icpc CXXFLAGS="-g -O3" FC=ifort FCFLAGS="-g -O3 -mp" ICC_LIBS=/opt/intel/cce/10.1.01...

Note that 'intel 2022' is a bit vague. The current version is 2023.1.0, and that has both the 'classic' (icc/icpc/ifort which it seems you used) and new (icx/ixpx/ifx) compilers -- the former are said to be going to be discontinued later this year. R did not know about ifx so did not build with the new set. The parts of the manual Tomas referred to were about the old compilers: the manual has now been re...

...n the South China University of Technology. I have been using clang compiler and related tools since I started studying C++ and I would like to work on LLVM in this year’s GSoC. I am interested in “Implement a single updater class for Dominators”. [1] I have achieved a bronze medal in the 2017 ACM-ICPC Asia Xian Regional Contest [2] (being a member of the team “Charizard”) thus I think I have some knowledge on basic tree/graph algorithms and data structures. I have gone through most of the LLVM Kaleidoscope tutorial and I have watched the video of the presentation “Dominator Trees and incrementa...

On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote: > > As a short and simple approach, I just compiled the current R release > on Ubuntu with ICC and MKL using just this: > > $ tar -xzf R-3.2.2.tar.gz > $ cd R-3.2.2 > $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g > -O3 -xHost" ./configure --with-blas="-lmkl_rt -lpthread" --with-lapack > --enable-memory-profiling --enable-R-shlib > $ make > $ sudo make install > $ R --version > R version 3.2.2 (2015-08-14) --...

...module load intel-2021.6.0/2021.6.0 oneapi-2022.1.0/mkl MKL="-L${MKLROOT}/lib/intel64 -lmkl_gf_lp64 -lmkl_core -lmkl_gnu_thread -dl -fopenmp" export CC="icc -std=c99" export CFLAGS="-g -O3 -wd188 -ip -mp" export FC=ifort export FLAGS="-g -O3 -mp" export CXX=icpc export CXXFLAGS="-g -O3 -mp" SHLIB_CXXLD=icpc export MKL_INTERFACE_LAYER=GNU,LP64 export MKL_THREADING_LAYER=GNU ./configure --prefix=/opt/intel-2021.6.0/R/4.3.1 --with-blas="$MKL" --with-lapack --enable-memory-profiling --enable-BLAS-shlib --enable-R-shlib --enable-R-static-l...

...amp; pcre2 (The current one on Centos 7 is TOO old) setenv CURLDIR "/uufs/chpc.utah.edu/sys/installdir/curl/7.65.3" setenv PCRE2DIR "/uufs/chpc.utah.edu/sys/installdir/pcre2/10.35" setenv PATH ${PCRE2DIR}/bin:$PATH Setting Compiler & linker flags: setenv CC icc setenv CXX icpc setenv F77 ifort setenv FC ifort setenv CFLAGS " -axCORE-AVX512,CORE-AVX2,AVX,SSE4.2 -O3 -qopenmp -fp-model precise -fPIC -I${MKLROOT}/include -I${CURLDIR}/include -I${PCRE2DIR}/include " setenv CXXFLAGS " ${CFLAGS} " setenv FFLAGS " ${CFLAGS} " s...

...lib/intel64 _icclibpath=$MKLROOT/linux/compiler/lib export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath} export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread" export CC="icc" export F77="ifort" export CXX="icpc" export AR="xiar" export LD="xild" export CFLAGS="-O3 -ipo -openmp -parallel -xAVX" export CXXFLAGS="-O3 -ipo -openmp -parallel -xAVX" export FFLAGS="-O3 -ipo -openmp -parallel -xAVX" export MAIN_LDFLAGS='-openmp' ./configure --with-lap...

...clibpath} > >> > export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp64 > >> > -lmkl_intel_thread -lmkl_core -liomp5 -lpthread" > >> > export CC="icc" > >> > export F77="ifort" > >> > export CXX="icpc" > >> > export AR="xiar" > >> > export LD="xild" > >> > export CFLAGS="-O3 -ipo -openmp -parallel -xAVX" > >> > export CXXFLAGS="-O3 -ipo -openmp -parallel -xAVX" > >> > export FFLAGS="-O3...

...source /opt/intel/bin/compilervars.sh intel64 _icclibpath=/opt/intel/compilers_and_lbraries_2016.0.109/linux/compiler/lib/intel64/ _mkllibpath=${MKLROOT}/lib/intel64/ _omp_lib=/opt/intel/lib/intel64/ MKL=" -L${_mkllibpath} -lmkl_rt -lpthread" export CC="icc" export CXX="icpc" export AR="xiar" export LD="xild" export F77="ifort" export CFLAGS="-g -O3 -xHost -I${MKLROOT}/include" export CXXFLAGS="-g -O3 -xHost -I${MKLROOT}/include" export FFLAGS="-I${MKLROOT}/include" export FCFLAGS="-I${MKLROOT}/incl...

...with icc & MKL on centos 7 with this: # https://software.intel.com/en-us/articles/build-r-301-with-intel-c-compiler-and-intel-mkl-on-linux# export ICC_OPT="-mkl -xHOST -fp-model strict" export CC="icc $ICC_OPT" export CXX="icpc $ICC_OPT" export FC="ifort -mkl -xHOST" export F77="ifort -mkl -xHOST" export FPICFLAGS=" -fPIC" export AR=xiar export LD=xild export MKL="-lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread" ./configure --with-x=no --with-blas=-lmkl