search for: icens

Displaying 7 results from an estimated 7 matches for "icens".

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2010 Aug 31
1
Q about package Icens: change the color of the shading in plot function
Hello! I want to use the Icens package for analyzing interval-censored data. This code from the manual gives me what I want. library(Icens) data(cosmesis) csub1 <- subset(cosmesis, subset=Trt==0, select=c(L,R)) e1 <- VEM(csub1) plot(e1) However, I would like to change the color of the shading from green to something less...
2006 Mar 31
0
help in using Icens package to estimate NPMLE for interval censored data
Dear all, I want to compute the NPMLE for interval censored data using the EMICM function in Icens package, but I didn't find much detailed instructions on how to use this. I couldn't even figure out how to specify the status of right censored, interval censored, observed. (probably due to my level of understanding.) Does anyone have experience on using this and could you please help me?...
2011 Apr 11
1
R CMD build --resave-data
...esaving the data, shouldn't it reinstall the package in order to be able to do this correctly? Here is why. There is this new warning in 'R CMD check' that complains about files not of a type allowed in a 'data' directory: http://bioconductor.org/checkResults/2.8/bioc-LATEST/Icens/lamb1-checksrc.html The Icens package also has .R files under data/ with things like: bet <- matrix(scan("CMVdata", quiet=TRUE),nc=5,byr=TRUE) i.e. the R code needs to access some of the text files located in the data/ folder. So in order to get rid of this warning I tried to mov...
2008 Apr 24
1
truncate row names
Hi, I would like to truncate row names. Is that possible? I ran a regression with the covariates in a matrix, and in the results the coefficients have the matrix name concatenated with the variable name: > full.t.ag <- Icens(lfirst_well, llast_well, lfirst_ill, formula=~ t.ag.X, breaks=t.ag.int, data=t.ag) > full.t.ag$cov$coeff t.ag.Xnyearc t.ag.Xhorse t.ag.Xswine t.ag.Xpet t.ag.Xother t.ag.Xpoultry t.ag.Xyr.horse -0.29497437 0.77857817 -0.53315929 -1.02745065 -0.17775268 -0.08237047...
2005 May 02
0
help : Bisect( )
I am using the package of Icens but for the function Bisect I do not know what ndir is it just says the direction of pvec, but what kind of values should I use ? thanks for reply pls give me an example.. Bisect(tA, pvec, ndir, Meps, tolbis=1e-07) Arguments: tA: The transpose of the clique matrix....
2007 Oct 30
6
trouble installing building packages from source using R 2.6.0 on Ubuntu Gutsy AMD64
I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is
2007 Mar 26
1
Problem in loading all packages all at once
...hierfstat","HighProbability","Hmisc","hmm.discnp","homals","hopach","howmany","HSAUR","HTMLapplets","httpRequest","hwde","hybridHclust","HyperbolicDist","ICE","Icens","IDPmisc","ifs","igraph","iid.test","impute","ineq","intcox","iplots","ipred","irr","ismev","ISwR","its","iWidgets","JavaGD","JGR",&q...