search for: icen

Hello! I want to use the Icens package for analyzing interval-censored data. This code from the manual gives me what I want. library(Icens) data(cosmesis) csub1 <- subset(cosmesis, subset=Trt==0, select=c(L,R)) e1 <- VEM(csub1) plot(e1) However, I would like to change the color of the shading from green to something les...

Dear all, I want to compute the NPMLE for interval censored data using the EMICM function in Icens package, but I didn't find much detailed instructions on how to use this. I couldn't even figure out how to specify the status of right censored, interval censored, observed. (probably due to my level of understanding.) Does anyone have experience on using this and could you please help me...

...esaving the data, shouldn't it reinstall the package in order to be able to do this correctly? Here is why. There is this new warning in 'R CMD check' that complains about files not of a type allowed in a 'data' directory: http://bioconductor.org/checkResults/2.8/bioc-LATEST/Icens/lamb1-checksrc.html The Icens package also has .R files under data/ with things like: bet <- matrix(scan("CMVdata", quiet=TRUE),nc=5,byr=TRUE) i.e. the R code needs to access some of the text files located in the data/ folder. So in order to get rid of this warning I tried to mo...

Hi, I would like to truncate row names. Is that possible? I ran a regression with the covariates in a matrix, and in the results the coefficients have the matrix name concatenated with the variable name: > full.t.ag <- Icens(lfirst_well, llast_well, lfirst_ill, formula=~ t.ag.X, breaks=t.ag.int, data=t.ag) > full.t.ag$cov$coeff t.ag.Xnyearc t.ag.Xhorse t.ag.Xswine t.ag.Xpet t.ag.Xother t.ag.Xpoultry t.ag.Xyr.horse -0.29497437 0.77857817 -0.53315929 -1.02745065 -0.17775268 -0.0823704...

I am using the package of Icens but for the function Bisect I do not know what ndir is it just says the direction of pvec, but what kind of values should I use ? thanks for reply pls give me an example.. Bisect(tA, pvec, ndir, Meps, tolbis=1e-07) Arguments: tA: The transpose of the clique matrix....

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is

...hierfstat","HighProbability","Hmisc","hmm.discnp","homals","hopach","howmany","HSAUR","HTMLapplets","httpRequest","hwde","hybridHclust","HyperbolicDist","ICE","Icens","IDPmisc","ifs","igraph","iid.test","impute","ineq","intcox","iplots","ipred","irr","ismev","ISwR","its","iWidgets","JavaGD","JGR",&...