search for: ibd

...dec, nmax = nrows, skip =0, na.strings, quiet = TRUE, fill = fill, strip.white = strip.white, nlak.lines.skip = blank.lines.skip, multi.line = FLASE, comment.char = comment.char) 7: read.table("_data\\TempFile, sep = ",", col.names = c("pair1", "pair2")) 6:ReadIBD.data("ibd.out") 5:RunGH(dat) 4:Read.Data(dat, x, HRallele) 3:eval.with.vis(expr, envir, enclos) 2:eval.with.vis(ei, envir) 1:source("TrendTest.Main.SSC") grep -e 'read.table; *.SSC indicates that the read.table() function is called in ReadIBD.SSC on lines seven and twelv...

...on the TCP socket. From the transfer logs I can see that the hang always happens when about to receive the same 32GB file, already a couple of GBs into the total transfer. Host A reports: .... 04:41:03 [6281] [receiver] send_msg_int(100, 1701) 04:41:03 [6281] recv_files(mysql/innodb_table_stats.ibd) 04:41:03 [6281] sender finished //mysql/innodb_table_stats.ibd 04:41:03 [6281] send_files(1749, //mysql/user.MYD) 04:41:03 [6281] sender finished //mysql/user.MYD 04:41:03 [6281] send_files(1750, //mysql/user.MYI) 04:41:03 [6281] sender finished //mysql/user.MYI 04:41:03 [6281] send_files(1806, //...

...OCATABLE keyword. For example if you have something like the following: DOUBLE PRECISION,ALLOCATABLE,DIMENSION(:,:,:,:) :: QAV ... ALLOCATE( QAV( -2:IMAX+2,-2:JMAX+2,-2:KMAX+2,ND) ) ... DO L = 1, 5 DO K = K1, K2 DO J = J1, J2 DO I = I1, I2 II = I + IADD IBD = II - IBDD ICD = II + IBDD QAV(I,J,K,L) = R6I * (2.0D0 * Q(IBD,J,K,L,N) + > 5.0D0 * Q( II,J,K,L,N) - > Q(ICD,J,K,L,N)) END DO END DO END DO END DO Most of the code need...

...he following: > > DOUBLE PRECISION,ALLOCATABLE,DIMENSION(:,:,:,:) :: QAV > ... > ALLOCATE( QAV( -2:IMAX+2,-2:JMAX+2,-2:KMAX+2,ND) ) > ... > DO L = 1, 5 > DO K = K1, K2 > DO J = J1, J2 > DO I = I1, I2 > II = I + IADD > IBD = II - IBDD > ICD = II + IBDD > > QAV(I,J,K,L) = R6I * (2.0D0 * Q(IBD,J,K,L,N) + >> 5.0D0 * Q( II,J,K,L,N) - >> Q(ICD,J,K,L,N)) > END DO > END DO &...

...t of the box on Fedora and does something useful like deploys a Fedora system with apache and maybe mysql? That would be greatly appreciated! Thanks Rob –––––––––––––––––––––––––––––– Robert J. Berger - Internet Bandwidth Development, LLC. Voice: 408-838-8896 eFax: +1-408-490-2868 http://www.ibd.com

...SARC 2005/546 FMR Update for IBTF 6227237 IBCM blames the client for SM''s fault 6281147 ibtl does not support fast memory registration (FMR) 6334921 tavor needs to support fast memory registration 6337636 tavor should use MSIs when possible Files: update: usr/src/uts/common/io/ib/clients/ibd/ibd.c update: usr/src/uts/common/io/ib/ibtl/ibtl_hca.c update: usr/src/uts/common/io/ib/ibtl/ibtl_impl.c update: usr/src/uts/common/io/ib/ibtl/ibtl_mem.c update: usr/src/uts/common/io/ib/inc.flg update: usr/src/uts/common/io/ib/mgt/ibcm/ibcm_impl.c update: usr/src/uts/common/io/ib/mgt/ibcm/ib...

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same...

...tried already with the package ISMEV from CRAN, (used for order statistics), but the results I get then don't make me much wiser. > library(DBI) > library(RMySQL) > library(ismev) > drv <- dbDriver("MySQL") > con <- dbConnect(drv, group = "mysql") > ibd <- dbSendQuery(con, statement = paste("SELECT * FROM database") ) > ibddata <- fetch(ibd, n = -1) > ibdfit <- rlarg.fit(ibddata[,-1]) >ibdfit $trans [1] FALSE $model $model[[1]] NULL $model[[2]] NULL $model[[3]] NULL $link [1] "c(identity, identity, identity)&q...

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same...

I do the these passages: library(Geneland) set.seed(1) data <- simdata(nindiv=200, coord.lim=c(0,1,0,1) , number.nuclei=5 , allele.numbers=rep(10,20), IBD=FALSE, npop=2, give.tess.grid=FALSE) geno <- data$genotypes coord <- t(data$coord.indiv) path.mcmc <- paste(tempdir(),"/",sep="") set.seed(1) mcmcFmodel(coordinates=coord, genotypes=geno, path.mcmc=path.mcmc,...

Hi, I have a data frame: > class(B27.vec) [1] "data.frame" > head(B27.vec) AGE Gend B27 AgeOn DD uveitis psoriasis IBD CD UC InI BASDAI BASFI Smok UV 1 57 1 1 19 38 2 1 1 1 1 1 5.40 8.08 NA 1 2 35 1 1 33 2 2 1 1 1 1 1 1.69 2.28 NA 1 3 49 2 1 40 9 1 1 1 1 1 1 8.30 9.40 NA 0 4 32 1 1 21 11 1...

...usr/src/cmd/vna/Makefile usr/src/cmd/vna/vna.c usr/src/cmd/zfs/zfs_main.c usr/src/grub/capability usr/src/grub/grub-0.97/stage2/builtins.c usr/src/grub/grub-0.97/stage2/graphics.c usr/src/grub/grub-0.97/stage2/term.h usr/src/lib/Makefile usr/src/lib/fm/libfmd_snmp/Makefile.com usr/src/lib/libdladm/Makefile usr/src/lib/libdladm/Makefile.com usr/src/lib/libdladm/common/flowattr.c usr/src/lib/libdladm/common/flowprop.c usr/src/lib/libdladm/common/libdladm.c usr/src/lib/libdladm/common/libdladm.h usr/src/lib/libdladm/common/libdladm_impl.h usr/src/lib/libdladm/common/libdlaggr.c usr/...

Dear mailing list, Genomics Medicine Ireland is opening new positions for our bioinformatics team. The team will analyse the ?omics data produced at GMI, which currently includes disease cohorts such as IBD, Multiple sclerosis, Alzheimer's, rare diseases, cancer and recently we have opened programs in diabetes and asthma. Our work will also focus on ancestry related topics, namely how population genetics can increase the power of disease analysis. We are building a team of cognitively diverse pe...

...there should be Icalendar::Get::Common#comment But there is no module Get in Vpim:Icalendar. There is the module Set... Am I missing something? Thanks Rob ?????????????????????????????? Robert J. Berger - Internet Bandwidth Development, LLC. Voice: 408-882-4755 eFax: +1-408-490-2868 http://www.ibd.com -------------- next part -------------- An HTML attachment was scrubbed... URL: http://rubyforge.org/pipermail/vpim-talk/attachments/20070406/ae9febad/attachment-0001.html

So has anyone had any success implementing recurring BYWEEKNO? ?????????????????????????????? Robert J. Berger - Internet Bandwidth Development, LLC. Voice: 408-838-8896 eFax: +1-408-490-2868 http://www.ibd.com

...R.shtml) are mainly for experimental crosses, but do multipoint analyses. You might also try QTL Express (http://qtl.cap.ed.ac.uk/), or if you are analysing smaller families, programs like MERLIN (Goncalo Abecasis's). For outbred families from natural populations, the estimation of multipoint ibd sharing can be done by various programs like MERLIN, LOKI, SIMWALK2 etc and the resulting kinship matrices can be imported into R. It's pretty easy to write a variance components or regression based QTL routine to analyse them. The programs by Jing hua Zhao, Beth Atkinson and others could als...

...lem? How can I check hardware? The only message I found is from mysqld: Number of processes running now: 0 091111 12:29:05 mysqld restarted 091111 12:29:07 InnoDB: Database was not shut down normally! InnoDB: Starting crash recovery. InnoDB: Reading tablespace information from the .ibd files... InnoDB: Restoring possible half-written data pages from the doublewrite InnoDB: buffer... 091111 12:29:08 InnoDB: Starting log scan based on checkpoint at InnoDB: log sequence number 0 100423936. InnoDB: Doing recovery: scanned up to log sequence number 0 100423936 091111 12:29:09...

...ot; + event.dtstart But got: TypeError: can''t convert DateTime into String from (irb):9:in `+'' from (irb):9 But event.start worked fine. ?????????????????????????????? Robert J. Berger - Internet Bandwidth Development, LLC. Voice: 408-838-8896 eFax: +1-408-490-2868 http://www.ibd.com -------------- next part -------------- An HTML attachment was scrubbed... URL: http://rubyforge.org/pipermail/icalendar-devel/attachments/20080108/30c64046/attachment.html

...lemodev mysqld_safe[23730]: restarted Jun 18 08:45:34 lemodev mysqld[23733]: 060618 8:45:34 InnoDB: Database was not shut down normally! Jun 18 08:45:34 lemodev mysqld[23733]: InnoDB: Starting crash recovery. Jun 18 08:45:34 lemodev mysqld[23733]: InnoDB: Reading tablespace information from the .ibd files... Jun 18 08:45:35 lemodev mysqld[23733]: InnoDB: Restoring possible half-written data pages from the doublewrite Jun 18 08:45:35 lemodev mysqld[23733]: InnoDB: buffer... Jun 18 08:45:37 lemodev mysqld[23733]: 060618 8:45:37 InnoDB: Starting log scan based on checkpoint at Jun 18 08:45:37 l...

Hello, I did a pca with over 200000 snps for 340 observations (ids). If I plot the eigenvectors (called rotation in prcomp) 2,3 and 4 (e.g. plot (rotation[,2]) I see a strange "column" in my data (see attachment). I suggest it is an artefact (but of what?). Suggestion: I used prcomp this way: prcomp (mat), where mat is a matrix with the column means already substracted followed by a